Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10o04f
(625 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.) 89 2e-18
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 41 7e-04
SB_56936| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_11311| Best HMM Match : M-inducer_phosp (HMM E-Value=8.4) 30 1.8
SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26) 28 5.4
SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08) 28 5.4
SB_28129| Best HMM Match : HR1 (HMM E-Value=6.7) 28 5.4
SB_33311| Best HMM Match : RIO1 (HMM E-Value=0) 28 7.1
SB_53775| Best HMM Match : Involucrin2 (HMM E-Value=7.1e-12) 27 9.4
SB_40011| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_37807| Best HMM Match : Desulfoferrod_N (HMM E-Value=3.8) 27 9.4
SB_36012| Best HMM Match : DUF755 (HMM E-Value=0.064) 27 9.4
SB_35292| Best HMM Match : AFG1_ATPase (HMM E-Value=6.8) 27 9.4
SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5) 27 9.4
>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 89.4 bits (212), Expect = 2e-18
Identities = 49/104 (47%), Positives = 70/104 (67%), Gaps = 3/104 (2%)
Frame = +3
Query: 318 KNSLFPTKLHLTDGDSEIIDSLMKDEDGRKQ-LRITQRLRLDQPKLDDVQKRIATS--SS 488
KNS T L G+ EI DSL++++ K LRITQRLRLDQPKL++V +RI T+ S
Sbjct: 625 KNSEEQT-LXXXXGNPEIADSLIRNDGSTKSSLRITQRLRLDQPKLEEVSRRINTAGASG 683
Query: 489 HAIFVGVSGSTAVVTNEDVSIQTRPMRNLVSYLKQKEAAGVISL 620
H + + + G+ + +Q RP+RNL++YLKQK+AAGV++L
Sbjct: 684 HCLLLALPGTQIQLPESTEELQHRPLRNLMTYLKQKQAAGVVNL 727
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 41.1 bits (92), Expect = 7e-04
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Frame = +3
Query: 261 TMAELVRKATTIWHGALILKNSLFPTKLHLTDGDSEIIDSLMKDEDGRK-------QLRI 419
T+ EL+ + +W G + LKN ++H G+S + ++ + + LRI
Sbjct: 924 TLLELLCRYPVVWQGLVALKNDTAAVQMHYLSGNSRLAEASLPQAPAAQAMATVPPPLRI 983
Query: 420 TQRLRLDQPKLDDVQKRI 473
QR++L+Q +L+ V +R+
Sbjct: 984 AQRMKLEQSQLEGVVRRM 1001
>SB_56936| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 325
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -2
Query: 150 IQNDASDSHILNLMEHVSILRHDNLLYHDRHLCRSHVHGHDAHL 19
+++D +H ++M HV+ + HD + HD H+ HD H+
Sbjct: 7 MEHDTHMTHDTHMM-HVTHMEHDTHMEHDTHMKHDTHMTHDTHM 49
>SB_11311| Best HMM Match : M-inducer_phosp (HMM E-Value=8.4)
Length = 279
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -1
Query: 187 DRERDLSTPGSLDPERRKRLSYSESNGARLHSSSR 83
DR+ DLS+PG +R+ + S+ G+R H + +
Sbjct: 240 DRDVDLSSPGMSAAQRKSLIKKSQELGSRFHHAKK 274
>SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)
Length = 2157
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -1
Query: 187 DRERDLSTPGSLDPERRKRLSYSESNGARLHSSSR*SPVP 68
D E +S P+RR R SYS+SNG L+ + VP
Sbjct: 1666 DNEYGVSDGEDERPQRRHRHSYSKSNGELLYEVHTNTRVP 1705
>SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)
Length = 839
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 102 VSILRHDNLLYHDRHLCRSHVHGHDAHLYPYKYH 1
+S H + L+H RH R H + H H YP+ +H
Sbjct: 564 ISTHPHHHHLHHHRHHHRHHHYHH--HHYPHHHH 595
>SB_28129| Best HMM Match : HR1 (HMM E-Value=6.7)
Length = 228
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = -3
Query: 545 NIFIGDYSSRTRHTHKNGMRARCGNTFLNII*LRLIQT*SLCDSELFSTIFIFHE 381
NI GD S T+ THK ++R + N++ +R + + ST I+H+
Sbjct: 46 NIIDGDESQNTQDTHKEETKSRIASDKENLLSIREMLNLCIDSLTAISTRQIYHK 100
>SB_33311| Best HMM Match : RIO1 (HMM E-Value=0)
Length = 490
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 498 FVGVSGSTAVVTNEDVSIQTRPMRNLVSYLKQKEAAGVIS 617
F+ VS S + + R RN+V + K+K AGV+S
Sbjct: 395 FIDVSQSVEPIHPHALEFLYRDCRNVVEFFKKKGVAGVMS 434
>SB_53775| Best HMM Match : Involucrin2 (HMM E-Value=7.1e-12)
Length = 1879
Score = 27.5 bits (58), Expect = 9.4
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Frame = -1
Query: 334 GNNEFLRISAPCQIVVALRTNSAIVRDEDSIPLLLRIDPSESLSGDL---RRDRERDLST 164
G+NE I+ C++ L + + + L L +P S S D+ RR + T
Sbjct: 974 GSNEGNLINL-CEVTRILSGSICNMSADHDEALDLDAEPQYSASNDMENSRRTNDPSQYT 1032
Query: 163 PGSLDPERRKRLSYSESN 110
P SLD +R R SE+N
Sbjct: 1033 PFSLDHKRNLRKRDSETN 1050
>SB_40011| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 148
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -2
Query: 123 ILNLMEHVSILRHDNLLYHDRHLCRSHVHGHDAH 22
I+ M ++ + HD+ HD H H H H H
Sbjct: 93 IITYMTIITYILHDHHQLHDHHHLHDHHHLHGHH 126
>SB_37807| Best HMM Match : Desulfoferrod_N (HMM E-Value=3.8)
Length = 396
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -2
Query: 258 VTKIASHYFYALIHQSHYQVIYDEIVSVTYRLQ 160
VT+IA+ + L+ Q+H Q +YD + V +L+
Sbjct: 336 VTQIATSSYNRLMQQNHEQTLYDWLWEVALQLR 368
>SB_36012| Best HMM Match : DUF755 (HMM E-Value=0.064)
Length = 265
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -1
Query: 220 PSESLSGDLRRDRERDLSTPGSLDPERRKRLSYSESNGAR 101
PS S SGD +R+R + S+ P +R YS R
Sbjct: 150 PSGSQSGDRQRERRLHKHSSPSISPSPPRRQKYSNGQSDR 189
>SB_35292| Best HMM Match : AFG1_ATPase (HMM E-Value=6.8)
Length = 305
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -2
Query: 258 VTKIASHYFYALIHQSHYQVIYDEIVSVTYRLQ 160
VT+IA+ + L+ Q+H Q +YD + V +L+
Sbjct: 105 VTQIATSSYNRLMQQNHEQTLYDWLWEVALQLR 137
>SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6500
Score = 27.5 bits (58), Expect = 9.4
Identities = 23/88 (26%), Positives = 42/88 (47%)
Frame = +3
Query: 303 GALILKNSLFPTKLHLTDGDSEIIDSLMKDEDGRKQLRITQRLRLDQPKLDDVQKRIATS 482
GA ++ LF + + +ID L + E G L R D K+D V+
Sbjct: 3530 GAAPKRSILFTDIMVTPEAMKRLIDGL-QIEQGSPSLGAALREARDMFKMDGVRPH---- 3584
Query: 483 SSHAIFVGVSGSTAVVTNEDVSIQTRPM 566
+ H + V ++ S++ +T++D+S RP+
Sbjct: 3585 ARHVLVV-ITDSSSGLTDQDISSAARPL 3611
>SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5)
Length = 237
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Frame = -2
Query: 102 VSILRHDNLLYHDRHLCRSHVHGHDAH----LYPYKYH 1
+ ILRH + +++RH H H H H +PY +H
Sbjct: 183 IIILRHRHRQHYNRHRRHHHHHRHRHHHHHPNHPYSHH 220
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,296,841
Number of Sequences: 59808
Number of extensions: 363445
Number of successful extensions: 1131
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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