Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10o04f
         (625 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                25   0.79 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.8  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          22   5.6  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.4  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   9.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.8  

>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -2

Query: 168 RLQAPLIQNDASDSHILNLMEHVSILRHDNLL 73
           ++ A +IQ +   S++LN  +H S L+H N++
Sbjct: 90  QVAAKIIQTEKY-SNMLNSEKHASFLKHSNIV 120


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 525  VVTNEDVSIQTRPMRNLVSYLKQKEAA 605
            VVTN+  SIQT  M+ +++ +  K  A
Sbjct: 1069 VVTNQQQSIQTSGMQRIIAQIGGKPIA 1095


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 387 KDEDGRKQLRITQRLRLDQ 443
           ++EDGR Q    +RL+LD+
Sbjct: 288 EEEDGRGQSEAEKRLKLDE 306



 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 114 LMEHVSILRHDNLLYHDRHLCRSHVHGH 31
           L++  ++ RH +L  H  HL  + V  H
Sbjct: 132 LIKQETLQRHHHLQNHHHHLQSTAVQDH 159


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 175 HAHDLVVDHLIVTLMDQCVEVV 240
           H H  +V HL  TL  + VE++
Sbjct: 105 HPHTAMVTHLPQTLTSENVEIL 126


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -2

Query: 609 HLLLLFV*DMIPNSSLVV-FVSKHL 538
           H+  L V ++IP +SLVV  + K+L
Sbjct: 287 HVFFLLVVEIIPPTSLVVPLLGKYL 311


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -2

Query: 609 HLLLLFV*DMIPNSSLVV-FVSKHL 538
           H+  L V ++IP +SLVV  + K+L
Sbjct: 287 HVFFLLVVEIIPPTSLVVPLLGKYL 311


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -1

Query: 208 LSGDLRRDRERDLSTPGSLDPERRKRLSYSE 116
           L G+L  +R   +  P +++PER + + +S+
Sbjct: 507 LIGELVNERADMIVAPLTINPERAEFIEFSK 537


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 515 TRHTHKNGMRARCGNT 468
           TRH  KNGM+     T
Sbjct: 226 TRHNTKNGMKTLLSET 241


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 4   VLIGVEVGIVAVDVAPTE 57
           VL+  E+ +V VDV PT+
Sbjct: 572 VLVISEIQMVIVDVIPTD 589


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,150
Number of Sequences: 438
Number of extensions: 3267
Number of successful extensions: 20
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)