Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10o04f
         (625 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19190.1 68417.m02832 zinc knuckle (CCHC-type) family protein...    29   2.5  
At3g02320.1 68416.m00214 N2,N2-dimethylguanosine tRNA methyltran...    29   3.3  
At1g14460.1 68414.m01715 DNA polymerase-related weak similarity ...    29   3.3  
At1g29140.1 68414.m03566 pollen Ole e 1 allergen and extensin fa...    28   5.8  
At1g10970.1 68414.m01259 metal transporter, putative (ZIP4) simi...    28   5.8  
At3g62860.1 68416.m07062 esterase/lipase/thioesterase family pro...    27   7.7  

>At4g19190.1 68417.m02832 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 595

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
 Frame = -1

Query: 364 ESPSVKCNLVGNNEFLRISAPCQIVVALRTNSAI--VRDEDSIPLLLRIDPSESLSGDLR 191
           E  +VKC   GN         C +  A+  N  +   RD+    ++   DPSE L  +L+
Sbjct: 207 EVRNVKCLRCGNFGHQSGDRDCPLKDAVMPNEELRLKRDDPLTAIIAHTDPSEPLKWELK 266

Query: 190 RDRERDLSTP-GSLDPE 143
             ++  LS P G  DP+
Sbjct: 267 --QKPGLSPPRGGFDPD 281


>At3g02320.1 68416.m00214 N2,N2-dimethylguanosine tRNA
           methyltransferase family protein similar to
           N2,N2-dimethylguanosine tRNA methyltransferase [Homo
           sapiens] GI:11066198; contains Pfam profile PF02005:
           N2,N2-dimethylguanosine tRNA methyltransferase
          Length = 599

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -1

Query: 439 SKRNLCVILSCFLPSSSFMRLSIISESPSVKCNLVGNNEFLRISAPCQIV 290
           S  NLC  L C  PS++  R ++I+ +  +    V N   ++  AP +++
Sbjct: 423 SLHNLCATLKCISPSAAMFRSAVINANYRISGTHV-NPLGMKTDAPMEVI 471


>At1g14460.1 68414.m01715 DNA polymerase-related weak similarity to
            DNA polymerase III holoenzyme tau subunit [Thermus
            thermophilus] GI:2583049
          Length = 1116

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
 Frame = -1

Query: 373  IISESPSVKCNLVGNNEFLRISAPCQIVVALRTNSAIVRDEDSIPLLLRIDPSESLSGDL 194
            ++  +  V+  L+   E L      QI V   T S+     + IP+  RI   E++  + 
Sbjct: 935  VLRRNVEVRIILLSETELLNSKQTRQIAV---TTSSYTESGNEIPMK-RI---EAIIQEQ 987

Query: 193  RRDRERDLSTPGS---LDPERRKRLSYSESNGARL 98
            R + E    TPGS   L PER + L   ++NG ++
Sbjct: 988  RLETEWLQKTPGSQGRLKPERNQILPQEDTNGVKV 1022


>At1g29140.1 68414.m03566 pollen Ole e 1 allergen and extensin
           family protein contains Pfam domain, PF01190: Pollen
           proteins Ole e I family
          Length = 171

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -1

Query: 373 IISESPSVKCNLVGNNEFLRISAPCQIVVALRTNSAIVRDE 251
           ++ +SP  +C  V N EFLR +A     ++L  N  IV +E
Sbjct: 102 VLLQSPDPECGDVNNQEFLRNAAR----ISLTANDGIVSNE 138


>At1g10970.1 68414.m01259 metal transporter, putative (ZIP4) similar
           to Zn and Cd transporter ZNT1 [Thlaspi caerulescens]
           gi|7381054|gb|AAF61374; member of the Zinc (Zn2+)-Iron
           (Fe2+) permease (ZIP) family, PMID:11500563
          Length = 408

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = -2

Query: 147 QNDASDSHILNLMEHVSILRHDNLLYHDRHLCRSHVHGHD-AHLY 16
           + D    HI+ +  H +  RH +   H    C  H HGH   H++
Sbjct: 199 EEDGGGIHIVGIRAHAAHHRHSHSNSHG--TCDGHAHGHSHGHMH 241


>At3g62860.1 68416.m07062 esterase/lipase/thioesterase family
           protein similar to monoglyceride lipase from [Homo
           sapiens] GI:14594904, [Mus musculus] GI:2632162;
           contains Interpro entry IPR000379
          Length = 348

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 8/69 (11%)
 Frame = +3

Query: 366 EIIDSLMKDEDGRKQLRITQRLRLDQPKLDDVQKRIATS-----SSHAI---FVGVSGST 521
           ++ID+  KD   R+++R  + +  D+P+L    + + TS     + H I   F  + G  
Sbjct: 176 DVIDAAFKDPVKREEIRNNKLIYQDKPRLKTALEMLRTSMDLEDTLHEITLPFFVLHGEA 235

Query: 522 AVVTNEDVS 548
            +VT+ ++S
Sbjct: 236 DIVTDPEIS 244


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,833,582
Number of Sequences: 28952
Number of extensions: 257359
Number of successful extensions: 834
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)