Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10o03r
         (473 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1110 - 34182943-34182963,34183122-34183301,34184201-341845...    29   1.4  
01_02_0074 + 10869546-10871373,10871449-10872077                       27   7.7  

>02_05_1110 -
           34182943-34182963,34183122-34183301,34184201-34184546,
           34184794-34184846
          Length = 199

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -3

Query: 69  LKHE*PGILNTKSGFSQVSDREN 1
           LKH   GI NTKS + +V  REN
Sbjct: 166 LKHNSSGICNTKSAYKEVVKREN 188


>01_02_0074 + 10869546-10871373,10871449-10872077
          Length = 818

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +2

Query: 17  TWLKPDFVFKIPGYS-CLREDRADGYGG 97
           TW K ++V KIP  S  LR D   GY G
Sbjct: 616 TWYKNEYVSKIPMTSMALRPDAEHGYPG 643


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,897,202
Number of Sequences: 37544
Number of extensions: 225620
Number of successful extensions: 462
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)