Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10o03r
(473 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 58 5e-09
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 57 1e-08
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 53 2e-07
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 51 9e-07
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 50 2e-06
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 48 5e-06
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 48 6e-06
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 48 9e-06
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 48 9e-06
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 45 5e-05
M38643-2|AAA28940.1| 192|Drosophila melanogaster protein ( D.me... 45 6e-05
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 40 0.002
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 34 0.085
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 34 0.11
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 33 0.26
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 33 0.26
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 33 0.26
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 32 0.46
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 32 0.46
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 32 0.46
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 32 0.46
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 31 0.60
AE014134-3392|AAF53993.2| 241|Drosophila melanogaster CG2042-PA... 29 3.2
AE014297-3754|AAF56435.1| 538|Drosophila melanogaster CG11859-P... 27 9.8
AE014296-636|AAF47758.2| 296|Drosophila melanogaster CG12077-PA... 27 9.8
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 58.4 bits (135), Expect = 5e-09
Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 2/157 (1%)
Frame = +2
Query: 5 SLSETWLKPDFVFKIP-GYSCLREDRADGYGGVCLLIRNSSTFSSFPLPSHSNCFSVIAA 181
SL ET ++ P Y L + +GGV LL+ S + + ++
Sbjct: 33 SLQETHIQYTNNIPTPINYKLLTNIATNRFGGVRLLVHKSIQHTVLNITIDIEAIAINIE 92
Query: 182 IVDGICFVSIYVPHPSLQIFNE-IKNLISVLPRPFMILGDFNSHHTSWGSSVSNSYGYEL 358
+ S Y+ P+ I N+ + N ++ P +I GDFN H WGS +N G
Sbjct: 93 SKLKLNIFSTYIS-PTKNITNQTLHNTFNIQQTPSLITGDFNGWHHPWGSPTTNKRGKIT 151
Query: 359 LDILDMYSLCILNSGSPTRLTKPGEVISAIDLSICTP 469
+D L +LN SPT + + IDL++C+P
Sbjct: 152 HRFIDNMHLILLNDKSPTHFS-THNTYTHIDLTLCSP 187
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 56.8 bits (131), Expect = 1e-08
Identities = 35/126 (27%), Positives = 64/126 (50%)
Frame = +2
Query: 95 GVCLLIRNSSTFSSFPLPSHSNCFSVIAAIVDGICFVSIYVPHPSLQIFNEIKNLISVLP 274
G+ +LI+ + + + S C ++ I V+ Y+P + ++I ++ L
Sbjct: 68 GIGVLIKRNVPHTYRNINSSILCSALQLNFEQVINIVNAYIPPSQIFSSSDISEILQNLN 127
Query: 275 RPFMILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLCILNSGSPTRLTKPGEVISAIDL 454
++LGD NS WGS +N+ G ++ ++ SL +LN GSPT L+ + ID+
Sbjct: 128 GSTILLGDLNSWSPLWGSPRTNTRGKKIETVILENSLIVLNDGSPTHLS-THNTFTHIDI 186
Query: 455 SICTPQ 472
S+ +PQ
Sbjct: 187 SLISPQ 192
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 53.2 bits (122), Expect = 2e-07
Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 8/144 (5%)
Frame = +2
Query: 8 LSETWLKPDFVFKIPGYSCLREDRADG---YGGVCLLIRNSSTFSSFPLPSHSNCF---- 166
LSET K K+ G+ + G GG +LI+NS + FPL +
Sbjct: 35 LSETHCKGAETPKLFGFVAYTANDPSGGNAKGGAAILIKNS--LAHFPLTPIATAKVQLA 92
Query: 167 -SVIAAIVDGICFVSIYVPHPSLQIFNEIKNLISVLPRPFMILGDFNSHHTSWGSSVSNS 343
+VI + I F ++Y P +E K+++ F++ GD+N+ H WG+ SN
Sbjct: 93 PAVIETALGPISFGAVYCPPRFAWTTDEFKDILEEFQTKFIVAGDWNASHWLWGAGRSNQ 152
Query: 344 YGYELLDILDMYSLCILNSGSPTR 415
G L +++ + L +G PTR
Sbjct: 153 RGIALANLVLNSEVDSLATGGPTR 176
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 50.8 bits (116), Expect = 9e-07
Identities = 40/143 (27%), Positives = 62/143 (43%), Gaps = 8/143 (5%)
Frame = +2
Query: 8 LSETWLKPDFVFKIPGYSCLREDRADG--YGGVCLLIRNSSTFSSFP--LPSHSNCFSVI 175
LSET L + F+I Y + DG +GG +LIRN + +H S+
Sbjct: 35 LSETHLTSKYNFQIRDYHFYGTNHPDGKAHGGTAILIRNRMKHHFYKEFAENHLQATSIN 94
Query: 176 AAIVDG--ICFVSIYVPHPSLQIFNEIKNLISVLPRPFMILGDFNSHHTSWGSSVSNSYG 349
+ D + ++Y P + + + L F+ GD+N+ HT WGS + N G
Sbjct: 95 IQLDDNTLLTLAAVYCPPRFTVLEAQFLDFFQALGPHFIAAGDYNAKHTHWGSRLVNPKG 154
Query: 350 YELLD--ILDMYSLCILNSGSPT 412
+L I L ++ GSPT
Sbjct: 155 KQLYKTIIKATNKLDHVSPGSPT 177
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 50.0 bits (114), Expect = 2e-06
Identities = 47/162 (29%), Positives = 75/162 (46%), Gaps = 11/162 (6%)
Frame = +2
Query: 8 LSETWLKPDFVFKIPGYSCLREDRA----DGYGGVCLLIRNSSTFSSFPL----PSHSNC 163
++E LK KI GY+ R + GGV + +R +T FP H
Sbjct: 35 VTELRLKRGETVKIYGYAYYPAYRPSLNNNSVGGVAVFVR--TTLRHFPQRVIETRHIQL 92
Query: 164 FSV-IAAIVDGICFVSIYVPHPSLQIFNE-IKNLISVLPRPFMILGDFNSHHTSWGSSVS 337
SV +A + + F +IY PS +I ++I + +++ GD+N+ H WG + +
Sbjct: 93 SSVKVATGLGDLQFSAIYCS-PSTRIEERHFTDIIRACGQRYLVGGDWNARHWLWGDTCN 151
Query: 338 NSYGYELLDILDMYSLCILNSGSPTRLT-KPGEVISAIDLSI 460
+ G EL + L + IL +GSPTR P S ID ++
Sbjct: 152 SPRGRELAEALSVTGAKILATGSPTRYPYVPSHTPSCIDFAV 193
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 48.4 bits (110), Expect = 5e-06
Identities = 46/161 (28%), Positives = 73/161 (45%), Gaps = 10/161 (6%)
Frame = +2
Query: 8 LSETWLKPDFVFKIPGYSCLREDRADG--YGGVCLLIRNSST---FSSFPLPSHSNCFSV 172
LSET L F IPGY + DG +GG +LIRN ++F ++ S+
Sbjct: 35 LSETHLTNKNNFHIPGYLFYGTNHPDGKAHGGTGILIRNRIKHHHLNNFD-KNYLQSTSI 93
Query: 173 IAAIVDG-ICFVSIYVPHPSLQIF-NEIKNLISVLPRPFMILGDFNSHHTSWGSSVSNSY 346
+ +G ++Y P P I ++ + L F+ GD+N+ HT WGS + +
Sbjct: 94 ALQLNNGSTTLAAVYCP-PRFPISEDQFMEFFNTLGDRFIAAGDYNAKHTHWGSRLVSPK 152
Query: 347 GYELLDILDM--YSLCILNSGSPTRL-TKPGEVISAIDLSI 460
G +L + L L ++ G PT P ++ ID +I
Sbjct: 153 GKQLYNALTKPENKLDYVSPGKPTYWPADPRKIPDLIDFAI 193
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 48.0 bits (109), Expect = 6e-06
Identities = 46/161 (28%), Positives = 72/161 (44%), Gaps = 10/161 (6%)
Frame = +2
Query: 8 LSETWLKPDFVFKIPGYSCLREDRADG--YGGVCLLIRNSST---FSSFPLPSHSNCFSV 172
LSET L F IPGY + DG +GG +LIRN ++F ++ S+
Sbjct: 35 LSETHLTNKNNFHIPGYLFYGTNHPDGKAHGGTGILIRNRIKHHHLNNFD-KNYLQSTSI 93
Query: 173 IAAIVDG-ICFVSIYVPHPSLQIF-NEIKNLISVLPRPFMILGDFNSHHTSWGSSVSNSY 346
+ +G ++Y P P I ++ + L F+ GD+N+ HT WGS +
Sbjct: 94 ALQLNNGSTTLAAVYCP-PRFPISEDQFMEFFNTLGDRFIAAGDYNAKHTHWGSRLVTPK 152
Query: 347 GYELLDILDM--YSLCILNSGSPTRL-TKPGEVISAIDLSI 460
G +L + L L ++ G PT P ++ ID +I
Sbjct: 153 GKQLYNALTKPENKLDYVSPGKPTYWPADPRKIPDLIDFAI 193
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 47.6 bits (108), Expect = 9e-06
Identities = 44/157 (28%), Positives = 67/157 (42%), Gaps = 22/157 (14%)
Frame = +2
Query: 8 LSETWLKPDFVFKIPGYSCLREDRADGYGG-VCLLIRNSSTFSSFP-LPSH--SNC-FSV 172
++ETWL F IP Y+ R DR + GG V + + N+ P + SH N +
Sbjct: 43 INETWLTHSDRFNIPEYTIYRNDRKESRGGGVAIAVSNTLIHEQIPCIKSHVIENVGIQI 102
Query: 173 IAAIVDGICFVSIYVPHPSLQIF----------NEIKNL-------ISVLPRPFMILGDF 301
+ SIY + + N +K+L IS + F+I GDF
Sbjct: 103 NTDSNSSLKIYSIYFAGNTSKCIPSSCDLSWDHNHLKSLYRSDLLKISQINGNFLICGDF 162
Query: 302 NSHHTSWGSSVSNSYGYELLDILDMYSLCILNSGSPT 412
NS H +W + +N +G L ++ D+ IL PT
Sbjct: 163 NSRHRAWKCTRANGWGKILNELSDLGKFSILYPTQPT 199
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 47.6 bits (108), Expect = 9e-06
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Frame = +2
Query: 179 AIVDGICFVSIYVP-HPSLQIFNE-IKNLISVLP--RPFMILGDFNSHHTSWGSSVSNSY 346
A + GI F S Y P S + F + ++ L++ RP +I GD N+ T WGS +SN+
Sbjct: 82 AKIRGIHFYSCYAPPSDSPEQFEDMLEKLVNHASGRRPTVIGGDLNAWATEWGSRISNTR 141
Query: 347 GYELLDILDMYSLCILNSG-SPT 412
G ++D +++ L +LN G PT
Sbjct: 142 GRAVIDAMNLLDLVLLNDGFKPT 164
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 45.2 bits (102), Expect = 5e-05
Identities = 36/156 (23%), Positives = 69/156 (44%), Gaps = 6/156 (3%)
Frame = +2
Query: 11 SETWLKPDFVFKIPGYSCLREDRADGY--GGVCLLIRNSSTFSSF-PLPSHSNCFSVI-- 175
+ET ++ +PGY G GG ++I++ S P+ ++ + +
Sbjct: 38 TETHMRVGQRIYLPGYLMYHAHHPSGNSRGGSAVIIKSRLCHSPLTPISTNDRQIARVHL 97
Query: 176 AAIVDGICFVSIYVPHPSLQIFNEIKNLISVLPRPFMILGDFNSHHTSWGSSVSNSYGYE 355
V + ++Y+P I ++ K++ + L F+ GD+N+ H WG+ S G
Sbjct: 98 QTSVGTVTVAAVYLPPAERWIVDDFKSMFAALGNKFIAGGDYNAKHAWWGNPRSCPRGKM 157
Query: 356 LLDILDMYSLCILNSGSPTRLT-KPGEVISAIDLSI 460
L +++ +L +G PT + P SA+D I
Sbjct: 158 LQEVIAHGQYQVLATGEPTFYSYNPLLTPSALDFFI 193
>M38643-2|AAA28940.1| 192|Drosophila melanogaster protein (
D.melanogaster mobileelement jockey gag-specific protein
gene, complete cds.).
Length = 192
Score = 44.8 bits (101), Expect = 6e-05
Identities = 31/139 (22%), Positives = 62/139 (44%), Gaps = 5/139 (3%)
Frame = +2
Query: 11 SETWLKPDFVFKIPGYSCLREDRADGY--GGVCLLIRNSSTFSSF-PLPSHSNCFSVI-- 175
+ET ++ +PGY G GG ++I++ S P+ ++ + +
Sbjct: 38 TETHMRVGQRIYLPGYLMYHAHHPSGNSRGGSAVIIKSRLCHSPLTPISTNDRQIARVHL 97
Query: 176 AAIVDGICFVSIYVPHPSLQIFNEIKNLISVLPRPFMILGDFNSHHTSWGSSVSNSYGYE 355
V + ++Y+P I ++ K++ + L F+ GD+N+ H WG+ S G
Sbjct: 98 QTSVGTVTVAAVYLPPAERWIVDDFKSMFAALGNKFIAGGDYNAKHAWWGNPRSCPRGKM 157
Query: 356 LLDILDMYSLCILNSGSPT 412
L +++ +L +G PT
Sbjct: 158 LQEVIAHGQYQVLATGEPT 176
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 39.9 bits (89), Expect = 0.002
Identities = 40/146 (27%), Positives = 61/146 (41%), Gaps = 22/146 (15%)
Frame = +2
Query: 41 FKIPGYSCLREDRADGYGG-VCLLIRNSSTFSSFP-LPSH--SNC-FSVIAAIVDGICFV 205
F IP Y+ R DR + GG V + + N+ P + SH N + +
Sbjct: 2 FNIPEYTIYRNDRKESRGGGVAIAVSNTLIHEQIPCIKSHVIENVGIQINTDSNSSLKIY 61
Query: 206 SIYVPHPSLQIF----------NEIKNL-------ISVLPRPFMILGDFNSHHTSWGSSV 334
SIY + + N +K+L IS + F+I GDFNS H +W +
Sbjct: 62 SIYFAGNTSKCIPSSCDLSWDHNHLKSLYRSDLLKISQINGNFLICGDFNSRHRAWKCTR 121
Query: 335 SNSYGYELLDILDMYSLCILNSGSPT 412
+N +G L ++ D+ IL PT
Sbjct: 122 ANGWGKILNELSDLGKFSILYPTQPT 147
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 34.3 bits (75), Expect = 0.085
Identities = 42/158 (26%), Positives = 63/158 (39%), Gaps = 18/158 (11%)
Frame = +2
Query: 44 KIPGY-SCLREDRADGYGGVCLLIRNSSTFSSFPLPSHSNCFSVIAAIV--------DGI 196
++PGY + L ++ A G I NSS P C ++ + I
Sbjct: 66 ELPGYFTYLAQNPASSKRGGVATIVNSSLRHMALEPIEKECIQSAPIVLLPENNRRSEMI 125
Query: 197 CFVSIYVPHPSLQI----FNEIKNLISVL---PRPFMILGDFNSHHTSWGSSVSNSYGYE 355
S+Y P PSL F ++ N ++ GD+N+ H WG + G
Sbjct: 126 VIASVYCP-PSLSWSPHHFTDVLNFAEKTMGGQTKLILCGDWNAKHRQWGCIRACQRGAA 184
Query: 356 LLDILDMYSLC-ILNSGSPTRLT-KPGEVISAIDLSIC 463
L D + S+ I+ +GS T + SAID SIC
Sbjct: 185 LYDAIQADSMAEIVATGSATHFPHDTRKSPSAIDFSIC 222
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 33.9 bits (74), Expect = 0.11
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 3/106 (2%)
Frame = +2
Query: 155 SNCFSVIAAIVDGICFVSI-YVPHPSLQIFNEIKNLISVLPRPFMILGDFNSHHTSWGSS 331
+N S + I C S+ ++PH + N + + + F++ GD+N+ H WG +
Sbjct: 106 NNRRSEMIVIASVYCPPSLRWLPHHFTDVLNFAEKTLGGQTK-FILCGDWNAKHRQWGCT 164
Query: 332 VSNSYGYELLDILDMYSLC-ILNSGSPTRLT-KPGEVISAIDLSIC 463
+ G L + + S I+ +G T + SAID SIC
Sbjct: 165 RACQRGTALYEAVQADSTAEIIATGCATHFPHDTRKNPSAIDFSIC 210
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 32.7 bits (71), Expect = 0.26
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Frame = +2
Query: 233 QIFNEIKNLISVLPRPFMILGDFNSHHTSWGSSVSNSYGYEL-LDILDMYSLCILNSGSP 409
++FN + L+ + F++ GD+N H WG+ +S + G L IL L I+ +G
Sbjct: 137 KLFNHFEMLLDGKSK-FILGGDWNCKHRLWGNYLSCARGRSLSQSILARKDLDIVATGHA 195
Query: 410 TRLT-KPGEVISAIDLSIC 463
T + SA+D +IC
Sbjct: 196 THFPFDKKKQPSALDFAIC 214
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 32.7 bits (71), Expect = 0.26
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Frame = +2
Query: 233 QIFNEIKNLISVLPRPFMILGDFNSHHTSWGSSVSNSYGYEL-LDILDMYSLCILNSGSP 409
++FN + L+ + F++ GD+N H WG+ +S + G L IL L I+ +G
Sbjct: 137 KLFNHFEMLLDGKSK-FILGGDWNCKHRLWGNYLSCARGRSLSQSILARKDLDIVATGHA 195
Query: 410 TRLT-KPGEVISAIDLSIC 463
T + SA+D +IC
Sbjct: 196 THFPFDKKKQPSALDFAIC 214
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 32.7 bits (71), Expect = 0.26
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Frame = +2
Query: 233 QIFNEIKNLISVLPRPFMILGDFNSHHTSWGSSVSNSYGYEL-LDILDMYSLCILNSGSP 409
++FN + L+ + F++ GD+N H WG+ +S + G L IL L I+ +G
Sbjct: 137 KLFNHFEMLLDGKSK-FILGGDWNCKHRLWGNYLSCARGRSLSQSILARKDLDIVATGHA 195
Query: 410 TRLT-KPGEVISAIDLSIC 463
T + SA+D +IC
Sbjct: 196 THFPFDKKKQPSALDFAIC 214
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 31.9 bits (69), Expect = 0.46
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Frame = +2
Query: 155 SNCFSVIAAIVDGICFVSI-YVPHPSLQIFNEIKNLISVLPRPFMILGDFNSHHTSWGSS 331
+N S + I C S+ + PH + N + + + F++ GD+N+ H WG +
Sbjct: 106 NNRRSEMIVIASVYCPPSLSWSPHHFTDVLNFAEKTLGGQTK-FILCGDWNAKHRQWGCT 164
Query: 332 VSNSYGYELLDILDMYSLC-ILNSGSPTRLT-KPGEVISAIDLSIC 463
+ G L + + + I+ +G T + SAID SIC
Sbjct: 165 RACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFSIC 210
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 31.9 bits (69), Expect = 0.46
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Frame = +2
Query: 155 SNCFSVIAAIVDGICFVSI-YVPHPSLQIFNEIKNLISVLPRPFMILGDFNSHHTSWGSS 331
+N S + I C S+ + PH + N + + + F++ GD+N+ H WG +
Sbjct: 106 NNRRSEMIVIASVYCPPSLSWSPHHFTDVLNFAEKTLGGQTK-FILCGDWNAKHRQWGCT 164
Query: 332 VSNSYGYELLDILDMYSLC-ILNSGSPTRLT-KPGEVISAIDLSIC 463
+ G L + + + I+ +G T + SAID SIC
Sbjct: 165 RACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFSIC 210
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 31.9 bits (69), Expect = 0.46
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Frame = +2
Query: 155 SNCFSVIAAIVDGICFVSI-YVPHPSLQIFNEIKNLISVLPRPFMILGDFNSHHTSWGSS 331
+N S + I C S+ + PH + N + + + F++ GD+N+ H WG +
Sbjct: 68 NNRRSEMIVIASVYCPPSLSWSPHHFTDVLNFAEKTLGGQTK-FILCGDWNAKHRQWGCT 126
Query: 332 VSNSYGYELLDILDMYSLC-ILNSGSPTRLT-KPGEVISAIDLSIC 463
+ G L + + + I+ +G T + SAID SIC
Sbjct: 127 RACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFSIC 172
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 31.9 bits (69), Expect = 0.46
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Frame = +2
Query: 155 SNCFSVIAAIVDGICFVSI-YVPHPSLQIFNEIKNLISVLPRPFMILGDFNSHHTSWGSS 331
+N S + I C S+ + PH + N + + + F++ GD+N+ H WG +
Sbjct: 106 NNRRSEMIVIASVYCPPSLSWSPHHFTDVLNFAEKTLGGQTK-FILCGDWNAKHRQWGCT 164
Query: 332 VSNSYGYELLDILDMYSLC-ILNSGSPTRLT-KPGEVISAIDLSIC 463
+ G L + + + I+ +G T + SAID SIC
Sbjct: 165 RACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFSIC 210
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 31.5 bits (68), Expect = 0.60
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = +2
Query: 218 PHPSLQIFNEIKNLISVLPRPFMILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLC-IL 394
PH + N + + + F++ GD+N+ H WG + + G L + + + I+
Sbjct: 12 PHHFTDVLNFAEKTLGGQTK-FILCGDWNAKHRQWGCTRACQRGTALYEAVQADPMAEII 70
Query: 395 NSGSPTRLT-KPGEVISAIDLSIC 463
+G T + SAID SIC
Sbjct: 71 ATGCATHFPHDTRKNPSAIDFSIC 94
>AE014134-3392|AAF53993.2| 241|Drosophila melanogaster CG2042-PA
protein.
Length = 241
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +2
Query: 293 GDFNSHHTSWGSSVSNSYGYELLDILDMYSLCILNSGSPTRLTKPGEVIS 442
GD+N+ H WG+ N G L +++ + L +G P R + + ++
Sbjct: 57 GDWNTSHWLWGAERCNRRGRALANLVLSTGMSSLVTGGPKRFQEAVDTLT 106
>AE014297-3754|AAF56435.1| 538|Drosophila melanogaster CG11859-PA
protein.
Length = 538
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +2
Query: 140 PLPSHSNCFSVIAAIVDGICFVSIYVPHPSLQIFNEIKNLISVLPRPFMILGDFN 304
P P N V+ +V G ++ + Q+++++ NLI L +I GDFN
Sbjct: 176 PKPIDFNRHCVLMDLVKGWPMTQVHELLDAPQVYDDLMNLIVRLGNSGVIHGDFN 230
>AE014296-636|AAF47758.2| 296|Drosophila melanogaster CG12077-PA
protein.
Length = 296
Score = 27.5 bits (58), Expect = 9.8
Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 3/107 (2%)
Frame = +2
Query: 53 GYSCLREDRADGYGGVCLLIRNSSTFSSFPLPSHSNCFSVIAAIVDGICFVSIY-VPHPS 229
G CL Y LL+ + F +P+ + +N + + IC +++Y + P
Sbjct: 187 GAICLASRLPTSYHAFVLLVEAAVFFVLYPIMTEANWHAGFMLPIFAICCMALYCISRPV 246
Query: 230 LQIFNEIKNLIS-VLPRPFMILGDFNSH-HTSWGSSVSNSYGYELLD 364
L ++ I+ V P F+ + + H W ++ E LD
Sbjct: 247 LYLYASTTIFINFVCPFIFVWQQQYKFNIHGPWDEAIVEENTEENLD 293
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,318,472
Number of Sequences: 53049
Number of extensions: 397734
Number of successful extensions: 859
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1622204766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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