Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10o03r
         (473 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    40   7e-04
U80028-2|AAN73869.1|  351|Caenorhabditis elegans Serpentine rece...    29   1.7  
U50312-3|AAA92320.2|  494|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z49130-8|CAA88973.1| 1490|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z49129-3|CAA88963.1| 1490|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z78546-5|CAO79773.1|  962|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z78546-4|CAB01771.3|  920|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 40.3 bits (90), Expect = 7e-04
 Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
 Frame = +2

Query: 206 SIYVPHPS-----LQIFNEIKNLISVLPRPFMILGDFNSHHTSWGSSVS-NSYGYELLDI 367
           ++YVP  S      ++  +  N+     +  +I GD N+HH++W S  S ++ G EL ++
Sbjct: 5   NVYVPPRSSSSNHARLMTDFSNIFQTKSKS-IISGDVNAHHSAWHSEGSEDTRGRELAEL 63

Query: 368 LDMY-SLCILNSGSPTRLTKPGEVISAIDLSICT 466
           +D++  L I N    TR       IS+ D++ICT
Sbjct: 64  IDLHPDLIIQNEQVHTRADTYS--ISSPDITICT 95


>U80028-2|AAN73869.1|  351|Caenorhabditis elegans Serpentine
           receptor, class h protein88 protein.
          Length = 351

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = +2

Query: 89  YGGVCLLIRNSSTFSSFPLPSHSNCFSVIAAIVDGI--CFVSIYVPHPSLQIFN-EIKNL 259
           +GG C+L ++    SS+ +P  +  F V   + D    C V+ Y+  P+L  F+  + N 
Sbjct: 45  FGGYCILYKSPKEMSSYRVPLFN--FHVWTCLADVFLNCLVTPYIFLPTLTGFSVGLLNF 102

Query: 260 ISVLPR 277
           + V P+
Sbjct: 103 LGVPPK 108


>U50312-3|AAA92320.2|  494|Caenorhabditis elegans Hypothetical
           protein B0222.3 protein.
          Length = 494

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +2

Query: 161 CFSVIAAIVDGICFVSIY--VPHPSLQIFNEIKNLISVLPRPFMILGDFNSHHTSWGSS 331
           C   I+ ++ GI    IY  V H  L+  N +KN +  LP  + +   FN+    W  S
Sbjct: 166 CSWFISPVLSGIISSIIYMIVDHTVLRTANPLKNGLRALPVFYFVCMAFNALMVFWDGS 224


>Z49130-8|CAA88973.1| 1490|Caenorhabditis elegans Hypothetical
           protein T06D8.10 protein.
          Length = 1490

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 119 SSTFSSFPLPSHSNCFSVIAAIVDGIC 199
           SST S+ P+P+  +CF+       GIC
Sbjct: 141 SSTISNCPIPTIDHCFATNYRSFSGIC 167


>Z49129-3|CAA88963.1| 1490|Caenorhabditis elegans Hypothetical
           protein T06D8.10 protein.
          Length = 1490

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 119 SSTFSSFPLPSHSNCFSVIAAIVDGIC 199
           SST S+ P+P+  +CF+       GIC
Sbjct: 141 SSTISNCPIPTIDHCFATNYRSFSGIC 167


>Z78546-5|CAO79773.1|  962|Caenorhabditis elegans Hypothetical
           protein T21H8.1b protein.
          Length = 962

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 68  REDRADGYGGVCLLIRNSSTFSSFPLPSHSNCFSVIAAIVD 190
           R   +D YG VC+L  ++ T SS    S ++     AA+VD
Sbjct: 4   RHSISDAYGAVCILPEDTLTVSS----SQNSHIDAFAALVD 40


>Z78546-4|CAB01771.3|  920|Caenorhabditis elegans Hypothetical
           protein T21H8.1a protein.
          Length = 920

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 68  REDRADGYGGVCLLIRNSSTFSSFPLPSHSNCFSVIAAIVD 190
           R   +D YG VC+L  ++ T SS    S ++     AA+VD
Sbjct: 4   RHSISDAYGAVCILPEDTLTVSS----SQNSHIDAFAALVD 40


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,289,199
Number of Sequences: 27780
Number of extensions: 199963
Number of successful extensions: 449
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)