Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10o03f
         (515 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.08c |||COPII-coated vesicle component Erv46|Schizosacc...    28   0.95 
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    27   1.7  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   2.9  
SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual     26   3.8  
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    25   6.7  
SPBC1105.18c ||SPBC887.21c|peptide release factor|Schizosaccharo...    25   8.9  
SPBP8B7.08c |||leucine carboxyl methyltransferase |Schizosacchar...    25   8.9  

>SPAC24B11.08c |||COPII-coated vesicle component
           Erv46|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 27.9 bits (59), Expect = 0.95
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -2

Query: 121 ELLDILDMYSLCILNSGSPTRLTKPGEVISAIDLSICTPQ 2
           ++LD+   +   I ++ S TRL+  GE+IS  DL I   Q
Sbjct: 87  DVLDVSGEFQRDIHHTVSKTRLSPSGEIISVDDLDIGNQQ 126


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1142

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 361  RNSSTFSSFPLPSHSNCFSVIAAIV 287
            RN S   S P P+H N FS+I  I+
Sbjct: 1027 RNLSMHWSIPFPTHHNFFSIIPFIL 1051


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 187 ILGDFNSHHTSWGSSVSNSYGYELLDILDMY 95
           +L  FN H  SW  + S +  Y++ ++L+ Y
Sbjct: 876 VLFQFNRHARSWIQNSSKAIPYQVKNLLESY 906


>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 435

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 17/65 (26%), Positives = 27/65 (41%)
 Frame = +2

Query: 212 N*VFNFIEDLQGGMRDIDRDKTDTINNSCNDRKAVTM*REREGRKGARVSDE*AYTTISI 391
           N V NF++      R+  R     +     D KA+T+   R+  +    + +     I I
Sbjct: 285 NKVANFVKAFNQDGREFIRSSVQKLLGFSKDEKAITVFPPRKRARKLEENKDPVRQDIPI 344

Query: 392 SPVFS 406
            PVFS
Sbjct: 345 PPVFS 349


>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 458 NLAKARFCIQNPWLFVLKRRQG*WIWWCMPTH 363
           ++ +  FC  +P+  V   R G  I+W M TH
Sbjct: 230 SVKQVNFCNDSPYNLVSCSRDGSIIFWDMRTH 261


>SPBC1105.18c ||SPBC887.21c|peptide release
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 16/51 (31%), Positives = 19/51 (37%)
 Frame = -2

Query: 223 KNLISVLPRPFMILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLCILNSG 71
           K  ISV    F  L + N  HT + S     Y  E L   D+    I   G
Sbjct: 11  KTFISVRLNAFSCLAELNFRHTWYCSKKETPYQLERLQEEDIEETFICGKG 61


>SPBP8B7.08c |||leucine carboxyl methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 310

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 8/33 (24%), Positives = 19/33 (57%)
 Frame = +2

Query: 152 PRCVMRVEITQNHERPRKN*N*VFNFIEDLQGG 250
           P C+ ++   + HE  ++N   + +++ D+ GG
Sbjct: 103 PNCIRKIRTIEKHEALKQN---IGDYVVDISGG 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,958,895
Number of Sequences: 5004
Number of extensions: 38109
Number of successful extensions: 97
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)