Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10o03f
(515 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript... 66 9e-13
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript... 60 3e-11
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript... 60 6e-11
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript... 58 2e-10
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript... 58 2e-10
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript... 55 1e-09
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript... 55 2e-09
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript... 53 7e-09
AB090815-2|BAC57906.1| 973|Anopheles gambiae reverse transcript... 52 2e-08
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ... 51 2e-08
M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein. 50 6e-08
AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcript... 49 8e-08
AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript... 37 5e-04
AB090818-2|BAC57912.1| 988|Anopheles gambiae reverse transcript... 29 0.093
AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript... 29 0.12
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra... 27 0.50
>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
protein.
Length = 1154
Score = 65.7 bits (153), Expect = 9e-13
Identities = 41/106 (38%), Positives = 61/106 (57%), Gaps = 6/106 (5%)
Frame = -2
Query: 304 VIAAIVDGICFVSIYVPHPSL--QIFNEIKNLISVLPRPF---MILGDFNSHHTSWGSSV 140
++AA V GI F+S+Y P PSL Q + + + + +I GDFN+ HT WGS
Sbjct: 77 LVAAKVAGIDFISVYAP-PSLSPQEYERLLEAVELEASSHSHVVIAGDFNAWHTEWGSRR 135
Query: 139 SNSYGYELLDILDMYSLCILNSGS-PTRLTKPGEVISAIDLSICTP 5
+N G ELL ++++ L ILN+GS PT + + S ID++ TP
Sbjct: 136 NNLRGEELLQMVEVLGLSILNNGSAPTFIGRGAARPSVIDVTFATP 181
>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
protein.
Length = 1173
Score = 60.5 bits (140), Expect = 3e-11
Identities = 37/105 (35%), Positives = 58/105 (55%), Gaps = 5/105 (4%)
Frame = -2
Query: 304 VIAAIVDGICFVSIYV-PHPSLQIFNEIKNL--ISVLPRPFMILG-DFNSHHTSWGSSVS 137
++AA + GI F+S Y P ++ F E N I V P ++LG DFN+ H +WGS+ +
Sbjct: 75 LVAADIGGITFISCYASPRMTVAEFEEFLNAVEIEVSAHPNVVLGGDFNAWHEAWGSART 134
Query: 136 NSYGYELLDILDMYSLCILNSGSPTRLTKPGEV-ISAIDLSICTP 5
G ELL+ ++ L +LN G+ + T G S ID++ +P
Sbjct: 135 KRKGEELLNTVEQLGLIVLNRGNTSTFTGRGIAGESVIDVTFASP 179
>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
protein.
Length = 1173
Score = 59.7 bits (138), Expect = 6e-11
Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Frame = -2
Query: 343 SSFPLPS--HSNCFSVIAAIVDGICFVSIYV----PHPSLQIFNEIKNLISVLPRPFMIL 182
SS+P+ S ++AA + GI F+S Y P + F L + +I
Sbjct: 82 SSYPIQRVLRSAVPGIVAAQIGGIVFISCYARPRRPEEDYEGFLAAVQLEASTHSQVVID 141
Query: 181 GDFNSHHTSWGSSVSNSYGYELLDILDMYSLCILNSGS-PTRLTKPGEVISAIDLSICTP 5
GDFN+ HT WGS+ ++ G +LL ++ L ++NSG+ PT + + S ID+ TP
Sbjct: 142 GDFNAWHTEWGSARNSQRGEDLLQLIQSVQLQVINSGNEPTFIGRGAATSSVIDVCFATP 201
>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
protein.
Length = 1201
Score = 58.0 bits (134), Expect = 2e-10
Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 7/106 (6%)
Frame = -2
Query: 304 VIAAIVDGICFVSIYVPHPSLQIFNEIKNLISVLPRP------FMILGDFNSHHTSWGSS 143
++AA V GI F+S+Y P PSL +E + L+ + ++ GDFN+ H WGS
Sbjct: 140 LVAAQVAGITFISVYAP-PSLSA-HEFERLLGAIELEAASHSRVVVAGDFNAWHEEWGSG 197
Query: 142 VSNSYGYELLDILDMYSLCILNSG-SPTRLTKPGEVISAIDLSICT 8
+ G ELL ++ L ILN G PT + + S ID+S +
Sbjct: 198 RNGQRGIELLQTVETLGLSILNQGRKPTFIGRGFAASSVIDVSFAS 243
>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
protein.
Length = 1099
Score = 57.6 bits (133), Expect = 2e-10
Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Frame = -2
Query: 319 SNCFSVIAAIVDGICFVSIYVP--HPS--LQIFNEIKNLISVLPRPFMILGDFNSHHTSW 152
SN ++AA + G F+S Y P P+ + F E L ++ +I GDFN+ H W
Sbjct: 73 SNTPGLVAAEIGGTTFLSCYAPPRQPTDEFERFIEAVQLETLTHSQVVIAGDFNAWHVEW 132
Query: 151 GSSVSNSYGYELLDILDMYSLCILNSGSPTRLTKPG-EVISAIDLSICTP 5
GS ++ G ELL + L +LN G+ + G S +D++ TP
Sbjct: 133 GSERNSEKGEELLSAIQQLDLVVLNQGTTSTFDGNGAATASIVDVAFATP 182
>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
protein.
Length = 1248
Score = 55.2 bits (127), Expect = 1e-09
Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 5/105 (4%)
Frame = -2
Query: 304 VIAAIVDGICFVSIYV-PHPSLQIFNEIKNLISVLPR--PFMIL-GDFNSHHTSWGSSVS 137
++ A V+GI V YV P+ ++ F EI I +L R P ++L GDFN+ HT+WGS +
Sbjct: 75 IVVADVNGITIVYYYVKPNVGVRQFEEIMERIDILIRGHPRVLLAGDFNAWHTAWGSERT 134
Query: 136 NSYGYELLDILDMYSLCILNSGSPTRLTKPGEV-ISAIDLSICTP 5
G LL +++ L +LN G+ G S ID++ +P
Sbjct: 135 KPKGIALLQLVNGLGLEVLNIGTSHTFRGCGSARPSRIDVAFASP 179
>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
protein.
Length = 1222
Score = 54.8 bits (126), Expect = 2e-09
Identities = 38/129 (29%), Positives = 67/129 (51%), Gaps = 5/129 (3%)
Frame = -2
Query: 379 GVCLLIRNSSTFSSFPLPSHSNCFSVIAAIVDGICFVSIYV-PHPSLQIFNEIKNLISVL 203
G +I +S T+ + S + + AA ++ + F+ YV P + F E+ I VL
Sbjct: 51 GKVAIIASSETYPVQQVVSVTQS-GIAAARINDVLFICCYVSPSAGVSEFEEVMQRIDVL 109
Query: 202 PR--PFMIL-GDFNSHHTSWGSSVSNSYGYELLDILDMYSLCILNSG-SPTRLTKPGEVI 35
R P ++ GD N+ HT+WGS +N+ G ++ ++D L +LN+G +PT L
Sbjct: 110 ARGHPRVVFAGDLNAWHTAWGSCRTNAKGEAVVQLVDSLGLEVLNTGTAPTFLGNGVARP 169
Query: 34 SAIDLSICT 8
S +D++ +
Sbjct: 170 SVVDVAFAS 178
>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
protein.
Length = 1168
Score = 52.8 bits (121), Expect = 7e-09
Identities = 32/86 (37%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Frame = -2
Query: 322 HSNCFSVIAAIVDGICFVSIYV-PHPSLQIFNEIKNLISVLPRP---FMILGDFNSHHTS 155
H V+AA V G VS YV P + F I I ++ R ++ GDFN+ H
Sbjct: 70 HRQTLGVVAADVGGTTIVSCYVSPQTGVPEFRSIMEKIDLIVRGCSRVLLAGDFNAMHLD 129
Query: 154 WGSSVSNSYGYELLDILDMYSLCILN 77
WGSS + G ELL + D L +LN
Sbjct: 130 WGSSRTCPKGLELLQLADNLGLVLLN 155
>AB090815-2|BAC57906.1| 973|Anopheles gambiae reverse transcriptase
protein.
Length = 973
Score = 51.6 bits (118), Expect = 2e-08
Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Frame = -2
Query: 301 IAAIVDGICFVSIYVPHP-SLQIFNEIKNLIS---VLPRPFMILGDFNSHHTSWGSSVSN 134
+ A+++ I F S Y P L+ F E+ IS P +I GDFN+ T WGS +N
Sbjct: 75 VIAVINKITFCSCYAPPRWDLEKFEEMLKRISDEVYDVNPIIISGDFNAWATEWGSKSTN 134
Query: 133 SYGYELLDILDMYSLCILNSGSPTRLTKPGEVISAIDLSICTP 5
+ G +L+ +L ++N G + S IDL+ C+P
Sbjct: 135 ARGNAVLEHFSRLNLVLVNVGFCPTFVRNSRT-SIIDLTFCSP 176
>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
gambiae RT2 retroposon. ).
Length = 1222
Score = 51.2 bits (117), Expect = 2e-08
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Frame = -2
Query: 319 SNCFSVIAAIVDGICFVSIYVPHPSLQI-----FNEIKNLISVLPRPFMILGDFNSHHTS 155
S ++AA + G+ F+S Y P PSL + F E L ++ GDFN+ H
Sbjct: 83 SEAQGLVAAQIGGVVFISCYAP-PSLNLAEFERFLEAIELEGFSHPQVVVAGDFNARHEE 141
Query: 154 WGSSVSNSYGYELLDILDMYSLCILNSGSPTRLTKPGEVI-SAIDLSICTP 5
WGS + G EL +++ L ++N G G + S +D++ +P
Sbjct: 142 WGSPRTCDRGEELHGMVEQLGLIVINQGREYTFVGNGVALPSIVDVAFASP 192
>M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.
Length = 1212
Score = 49.6 bits (113), Expect = 6e-08
Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 6/105 (5%)
Frame = -2
Query: 304 VIAAIVDGICFVSIYVPHPSL--QIFNEIKNLISVLPRPF---MILGDFNSHHTSWGSSV 140
+IAA V GI F+S Y P PSL + F E I + + ++ GDFN+ H WGS
Sbjct: 134 LIAAKVGGITFLSCYAP-PSLSREGFAEFVEAIELEAQSHPQVVVAGDFNAWHEEWGSRR 192
Query: 139 SNSYGYELLDILDMYSLCILNSGSPTRLTKPG-EVISAIDLSICT 8
SN G LL+ L ++N G+ G S +D++ +
Sbjct: 193 SNERGEVLLEASQQLGLLLMNRGNVATFVGNGVATASVVDVTFAS 237
>AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcriptase
protein.
Length = 1049
Score = 49.2 bits (112), Expect = 8e-08
Identities = 36/110 (32%), Positives = 58/110 (52%), Gaps = 6/110 (5%)
Frame = -2
Query: 319 SNCFSVIA-AIVDGICFVSIYVPHPS--LQIFNE-IKNLISVLP--RPFMILGDFNSHHT 158
SN F A V+G+ F S Y P PS L+ F+ + NL++ L RP +I GDFN+
Sbjct: 66 SNTFEGFCIAEVNGVFFCSCYAP-PSWELERFHVMLDNLVAELDGHRPLVIAGDFNAWAV 124
Query: 157 SWGSSVSNSYGYELLDILDMYSLCILNSGSPTRLTKPGEVISAIDLSICT 8
WGS +NS G +L+ + + N+G+ + + S +D++ C+
Sbjct: 125 EWGSKRTNSRGDAVLESFARLGVTLGNAGTTPTFNR-NKRTSIVDITFCS 173
>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
protein.
Length = 1022
Score = 36.7 bits (81), Expect = 5e-04
Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 10/106 (9%)
Frame = -2
Query: 304 VIAAIVDGICFVSIYVPHP-SLQIFNEI-KNLISVLP--RPFMILGDFNSHHTSWGSSV- 140
++A V GI VS Y P ++Q F E+ N++ + F++ GDFN+ +SW +++
Sbjct: 75 MLAVEVGGILIVSAYAPPSWTVQEFEELLDNIVLTVSGSSKFVVAGDFNAWSSSWANTLG 134
Query: 139 -----SNSYGYELLDILDMYSLCILNSGSPTRLTKPGEVISAIDLS 17
G LL + ++N+G T +T E SAIDL+
Sbjct: 135 ARGESQRLRGDTLLAAFAGLEMVLMNNGQDTFVTP--ERKSAIDLT 178
>AB090818-2|BAC57912.1| 988|Anopheles gambiae reverse transcriptase
protein.
Length = 988
Score = 29.1 bits (62), Expect = 0.093
Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 13/106 (12%)
Frame = -2
Query: 283 GICFVSIYVPHPSLQI-FNEIKN----LISVLPR--PFMILGDFNSHHTSWG------SS 143
GI F S+Y+P + E K ++S+LPR +I G N +WG
Sbjct: 82 GIVFCSVYLPPVGSDLTVEEYKRKWTEIVSMLPRNRDTVIGGYVNVWSGAWGMERRPNDG 141
Query: 142 VSNSYGYELLDILDMYSLCILNSGSPTRLTKPGEVISAIDLSICTP 5
S G ++D L +LN G+ + S +D+S C+P
Sbjct: 142 ERVSRGGVVMDAAAALGLVLLNQGNQSTWIGANGRNSIVDVSFCSP 187
>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
protein.
Length = 1009
Score = 28.7 bits (61), Expect = 0.12
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 10/98 (10%)
Frame = -2
Query: 271 VSIYVPHP-SLQIFN-EIKNLISVLP--RPFMILGDFNSHHTSWGSSV------SNSYGY 122
VS+Y P S++ F + N + + F+I GDFN+ SW + + G
Sbjct: 84 VSVYAPPRFSMEEFQIMLDNTVMAVTGIHKFVIGGDFNAWSASWNNQLGERGETQKRRGE 143
Query: 121 ELLDILDMYSLCILNSGSPTRLTKPGEVISAIDLSICT 8
+L +LN GS PG S +DL+ +
Sbjct: 144 LVLSTFAQIDAILLNDGSTPTYVGPGRT-SVVDLTFAS 180
>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
transcriptase protein.
Length = 1049
Score = 26.6 bits (56), Expect = 0.50
Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 21/136 (15%)
Frame = -2
Query: 475 IFSLSETWLK---PDFVFKIPGYSCLREDRA-----DGYGGVCLLIRNSSTFSSFPLPSH 320
+ +L+ETWL P + +S R DR+ GGV L + N+ + S LPS
Sbjct: 108 LIALTETWLVDNIPSALLFNNNFSVYRCDRSLSGSSSRGGGVLLAVSNA--YESIELPSR 165
Query: 319 SNCFSVIAAIVD----GICFVSIYVPHPSLQIFNEIKNL--------ISVLPRPFM-ILG 179
I V + + +Y+P + +++L + + P + ++G
Sbjct: 166 DRSLEYICVRVACNNAHLYVMVVYIPPQLSSEISTLRSLHDCISSFTLRLKPSDLLFVIG 225
Query: 178 DFNSHHTSWGSSVSNS 131
DFN SW ++ +S
Sbjct: 226 DFNQPSISWSTADPSS 241
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 494,181
Number of Sequences: 2352
Number of extensions: 9209
Number of successful extensions: 40
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 46937349
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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