Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10o03f
(515 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 66 3e-11
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 57 2e-08
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 54 2e-07
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 51 8e-07
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 51 1e-06
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 49 4e-06
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 48 6e-06
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 48 1e-05
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 48 1e-05
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 45 5e-05
M38643-2|AAA28940.1| 192|Drosophila melanogaster protein ( D.me... 45 7e-05
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 40 0.002
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 35 0.075
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 34 0.13
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 33 0.30
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 33 0.30
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 33 0.30
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 32 0.53
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 32 0.53
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 32 0.53
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 32 0.53
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 31 0.70
AE014134-3392|AAF53993.2| 241|Drosophila melanogaster CG2042-PA... 29 3.7
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 66.1 bits (154), Expect = 3e-11
Identities = 46/167 (27%), Positives = 74/167 (44%), Gaps = 2/167 (1%)
Frame = -2
Query: 499 IINTFNPFIFSLSETWLKPDFVFKIP-GYSCLREDRADGYGGVCLLIRNSSTFSSFPLPS 323
+I ++P I SL ET ++ P Y L + +GGV LL+ S + +
Sbjct: 23 LIKKYSPHIISLQETHIQYTNNIPTPINYKLLTNIATNRFGGVRLLVHKSIQHTVLNITI 82
Query: 322 HSNCFSVIAAIVDGICFVSIYVPHPSLQIFNE-IKNLISVLPRPFMILGDFNSHHTSWGS 146
++ + S Y+ P+ I N+ + N ++ P +I GDFN H WGS
Sbjct: 83 DIEAIAINIESKLKLNIFSTYIS-PTKNITNQTLHNTFNIQQTPSLITGDFNGWHHPWGS 141
Query: 145 SVSNSYGYELLDILDMYSLCILNSGSPTRLTKPGEVISAIDLSICTP 5
+N G +D L +LN SPT + + IDL++C+P
Sbjct: 142 PTTNKRGKITHRFIDNMHLILLNDKSPTHFS-THNTYTHIDLTLCSP 187
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 56.8 bits (131), Expect = 2e-08
Identities = 35/126 (27%), Positives = 64/126 (50%)
Frame = -2
Query: 379 GVCLLIRNSSTFSSFPLPSHSNCFSVIAAIVDGICFVSIYVPHPSLQIFNEIKNLISVLP 200
G+ +LI+ + + + S C ++ I V+ Y+P + ++I ++ L
Sbjct: 68 GIGVLIKRNVPHTYRNINSSILCSALQLNFEQVINIVNAYIPPSQIFSSSDISEILQNLN 127
Query: 199 RPFMILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLCILNSGSPTRLTKPGEVISAIDL 20
++LGD NS WGS +N+ G ++ ++ SL +LN GSPT L+ + ID+
Sbjct: 128 GSTILLGDLNSWSPLWGSPRTNTRGKKIETVILENSLIVLNDGSPTHLS-THNTFTHIDI 186
Query: 19 SICTPQ 2
S+ +PQ
Sbjct: 187 SLISPQ 192
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 53.6 bits (123), Expect = 2e-07
Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 8/147 (5%)
Frame = -2
Query: 475 IFSLSETWLKPDFVFKIPGYSCLREDRADG---YGGVCLLIRNSSTFSSFPLPSHSNCF- 308
+ LSET K K+ G+ + G GG +LI+NS + FPL +
Sbjct: 32 VLLLSETHCKGAETPKLFGFVAYTANDPSGGNAKGGAAILIKNS--LAHFPLTPIATAKV 89
Query: 307 ----SVIAAIVDGICFVSIYVPHPSLQIFNEIKNLISVLPRPFMILGDFNSHHTSWGSSV 140
+VI + I F ++Y P +E K+++ F++ GD+N+ H WG+
Sbjct: 90 QLAPAVIETALGPISFGAVYCPPRFAWTTDEFKDILEEFQTKFIVAGDWNASHWLWGAGR 149
Query: 139 SNSYGYELLDILDMYSLCILNSGSPTR 59
SN G L +++ + L +G PTR
Sbjct: 150 SNQRGIALANLVLNSEVDSLATGGPTR 176
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 51.2 bits (117), Expect = 8e-07
Identities = 40/146 (27%), Positives = 63/146 (43%), Gaps = 8/146 (5%)
Frame = -2
Query: 475 IFSLSETWLKPDFVFKIPGYSCLREDRADG--YGGVCLLIRNSSTFSSFP--LPSHSNCF 308
+ LSET L + F+I Y + DG +GG +LIRN + +H
Sbjct: 32 VMLLSETHLTSKYNFQIRDYHFYGTNHPDGKAHGGTAILIRNRMKHHFYKEFAENHLQAT 91
Query: 307 SVIAAIVDG--ICFVSIYVPHPSLQIFNEIKNLISVLPRPFMILGDFNSHHTSWGSSVSN 134
S+ + D + ++Y P + + + L F+ GD+N+ HT WGS + N
Sbjct: 92 SINIQLDDNTLLTLAAVYCPPRFTVLEAQFLDFFQALGPHFIAAGDYNAKHTHWGSRLVN 151
Query: 133 SYGYELLD--ILDMYSLCILNSGSPT 62
G +L I L ++ GSPT
Sbjct: 152 PKGKQLYKTIIKATNKLDHVSPGSPT 177
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 50.8 bits (116), Expect = 1e-06
Identities = 48/165 (29%), Positives = 76/165 (46%), Gaps = 11/165 (6%)
Frame = -2
Query: 475 IFSLSETWLKPDFVFKIPGYSCLREDRA----DGYGGVCLLIRNSSTFSSFPL----PSH 320
I ++E LK KI GY+ R + GGV + +R +T FP H
Sbjct: 32 ILLVTELRLKRGETVKIYGYAYYPAYRPSLNNNSVGGVAVFVR--TTLRHFPQRVIETRH 89
Query: 319 SNCFSV-IAAIVDGICFVSIYVPHPSLQIFNE-IKNLISVLPRPFMILGDFNSHHTSWGS 146
SV +A + + F +IY PS +I ++I + +++ GD+N+ H WG
Sbjct: 90 IQLSSVKVATGLGDLQFSAIYCS-PSTRIEERHFTDIIRACGQRYLVGGDWNARHWLWGD 148
Query: 145 SVSNSYGYELLDILDMYSLCILNSGSPTRLT-KPGEVISAIDLSI 14
+ ++ G EL + L + IL +GSPTR P S ID ++
Sbjct: 149 TCNSPRGRELAEALSVTGAKILATGSPTRYPYVPSHTPSCIDFAV 193
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 48.8 bits (111), Expect = 4e-06
Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 10/164 (6%)
Frame = -2
Query: 475 IFSLSETWLKPDFVFKIPGYSCLREDRADG--YGGVCLLIRNSST---FSSFPLPSHSNC 311
+ LSET L F IPGY + DG +GG +LIRN ++F ++
Sbjct: 32 VMLLSETHLTNKNNFHIPGYLFYGTNHPDGKAHGGTGILIRNRIKHHHLNNFD-KNYLQS 90
Query: 310 FSVIAAIVDG-ICFVSIYVPHPSLQIF-NEIKNLISVLPRPFMILGDFNSHHTSWGSSVS 137
S+ + +G ++Y P P I ++ + L F+ GD+N+ HT WGS +
Sbjct: 91 TSIALQLNNGSTTLAAVYCP-PRFPISEDQFMEFFNTLGDRFIAAGDYNAKHTHWGSRLV 149
Query: 136 NSYGYELLDILDM--YSLCILNSGSPTRL-TKPGEVISAIDLSI 14
+ G +L + L L ++ G PT P ++ ID +I
Sbjct: 150 SPKGKQLYNALTKPENKLDYVSPGKPTYWPADPRKIPDLIDFAI 193
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 48.4 bits (110), Expect = 6e-06
Identities = 46/164 (28%), Positives = 73/164 (44%), Gaps = 10/164 (6%)
Frame = -2
Query: 475 IFSLSETWLKPDFVFKIPGYSCLREDRADG--YGGVCLLIRNSST---FSSFPLPSHSNC 311
+ LSET L F IPGY + DG +GG +LIRN ++F ++
Sbjct: 32 VMLLSETHLTNKNNFHIPGYLFYGTNHPDGKAHGGTGILIRNRIKHHHLNNFD-KNYLQS 90
Query: 310 FSVIAAIVDG-ICFVSIYVPHPSLQIF-NEIKNLISVLPRPFMILGDFNSHHTSWGSSVS 137
S+ + +G ++Y P P I ++ + L F+ GD+N+ HT WGS +
Sbjct: 91 TSIALQLNNGSTTLAAVYCP-PRFPISEDQFMEFFNTLGDRFIAAGDYNAKHTHWGSRLV 149
Query: 136 NSYGYELLDILDM--YSLCILNSGSPTRL-TKPGEVISAIDLSI 14
G +L + L L ++ G PT P ++ ID +I
Sbjct: 150 TPKGKQLYNALTKPENKLDYVSPGKPTYWPADPRKIPDLIDFAI 193
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 47.6 bits (108), Expect = 1e-05
Identities = 44/157 (28%), Positives = 67/157 (42%), Gaps = 22/157 (14%)
Frame = -2
Query: 466 LSETWLKPDFVFKIPGYSCLREDRADGYGG-VCLLIRNSSTFSSFP-LPSH--SNC-FSV 302
++ETWL F IP Y+ R DR + GG V + + N+ P + SH N +
Sbjct: 43 INETWLTHSDRFNIPEYTIYRNDRKESRGGGVAIAVSNTLIHEQIPCIKSHVIENVGIQI 102
Query: 301 IAAIVDGICFVSIYVPHPSLQIF----------NEIKNL-------ISVLPRPFMILGDF 173
+ SIY + + N +K+L IS + F+I GDF
Sbjct: 103 NTDSNSSLKIYSIYFAGNTSKCIPSSCDLSWDHNHLKSLYRSDLLKISQINGNFLICGDF 162
Query: 172 NSHHTSWGSSVSNSYGYELLDILDMYSLCILNSGSPT 62
NS H +W + +N +G L ++ D+ IL PT
Sbjct: 163 NSRHRAWKCTRANGWGKILNELSDLGKFSILYPTQPT 199
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 47.6 bits (108), Expect = 1e-05
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Frame = -2
Query: 295 AIVDGICFVSIYVP-HPSLQIFNE-IKNLISVLP--RPFMILGDFNSHHTSWGSSVSNSY 128
A + GI F S Y P S + F + ++ L++ RP +I GD N+ T WGS +SN+
Sbjct: 82 AKIRGIHFYSCYAPPSDSPEQFEDMLEKLVNHASGRRPTVIGGDLNAWATEWGSRISNTR 141
Query: 127 GYELLDILDMYSLCILNSG-SPT 62
G ++D +++ L +LN G PT
Sbjct: 142 GRAVIDAMNLLDLVLLNDGFKPT 164
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 45.2 bits (102), Expect = 5e-05
Identities = 36/156 (23%), Positives = 69/156 (44%), Gaps = 6/156 (3%)
Frame = -2
Query: 463 SETWLKPDFVFKIPGYSCLREDRADGY--GGVCLLIRNSSTFSSF-PLPSHSNCFSVI-- 299
+ET ++ +PGY G GG ++I++ S P+ ++ + +
Sbjct: 38 TETHMRVGQRIYLPGYLMYHAHHPSGNSRGGSAVIIKSRLCHSPLTPISTNDRQIARVHL 97
Query: 298 AAIVDGICFVSIYVPHPSLQIFNEIKNLISVLPRPFMILGDFNSHHTSWGSSVSNSYGYE 119
V + ++Y+P I ++ K++ + L F+ GD+N+ H WG+ S G
Sbjct: 98 QTSVGTVTVAAVYLPPAERWIVDDFKSMFAALGNKFIAGGDYNAKHAWWGNPRSCPRGKM 157
Query: 118 LLDILDMYSLCILNSGSPTRLT-KPGEVISAIDLSI 14
L +++ +L +G PT + P SA+D I
Sbjct: 158 LQEVIAHGQYQVLATGEPTFYSYNPLLTPSALDFFI 193
>M38643-2|AAA28940.1| 192|Drosophila melanogaster protein (
D.melanogaster mobileelement jockey gag-specific protein
gene, complete cds.).
Length = 192
Score = 44.8 bits (101), Expect = 7e-05
Identities = 31/139 (22%), Positives = 62/139 (44%), Gaps = 5/139 (3%)
Frame = -2
Query: 463 SETWLKPDFVFKIPGYSCLREDRADGY--GGVCLLIRNSSTFSSF-PLPSHSNCFSVI-- 299
+ET ++ +PGY G GG ++I++ S P+ ++ + +
Sbjct: 38 TETHMRVGQRIYLPGYLMYHAHHPSGNSRGGSAVIIKSRLCHSPLTPISTNDRQIARVHL 97
Query: 298 AAIVDGICFVSIYVPHPSLQIFNEIKNLISVLPRPFMILGDFNSHHTSWGSSVSNSYGYE 119
V + ++Y+P I ++ K++ + L F+ GD+N+ H WG+ S G
Sbjct: 98 QTSVGTVTVAAVYLPPAERWIVDDFKSMFAALGNKFIAGGDYNAKHAWWGNPRSCPRGKM 157
Query: 118 LLDILDMYSLCILNSGSPT 62
L +++ +L +G PT
Sbjct: 158 LQEVIAHGQYQVLATGEPT 176
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 39.9 bits (89), Expect = 0.002
Identities = 40/146 (27%), Positives = 61/146 (41%), Gaps = 22/146 (15%)
Frame = -2
Query: 433 FKIPGYSCLREDRADGYGG-VCLLIRNSSTFSSFP-LPSH--SNC-FSVIAAIVDGICFV 269
F IP Y+ R DR + GG V + + N+ P + SH N + +
Sbjct: 2 FNIPEYTIYRNDRKESRGGGVAIAVSNTLIHEQIPCIKSHVIENVGIQINTDSNSSLKIY 61
Query: 268 SIYVPHPSLQIF----------NEIKNL-------ISVLPRPFMILGDFNSHHTSWGSSV 140
SIY + + N +K+L IS + F+I GDFNS H +W +
Sbjct: 62 SIYFAGNTSKCIPSSCDLSWDHNHLKSLYRSDLLKISQINGNFLICGDFNSRHRAWKCTR 121
Query: 139 SNSYGYELLDILDMYSLCILNSGSPT 62
+N +G L ++ D+ IL PT
Sbjct: 122 ANGWGKILNELSDLGKFSILYPTQPT 147
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 34.7 bits (76), Expect = 0.075
Identities = 48/184 (26%), Positives = 75/184 (40%), Gaps = 19/184 (10%)
Frame = -2
Query: 505 IHIINTFNPFIFSLSETWLKPDFV-FKIPGY-SCLREDRADGYGGVCLLIRNSSTFSSFP 332
+ I+N + I ++ET L + ++PGY + L ++ A G I NSS
Sbjct: 41 LFILN-IDAHIIIVTETRLDNNSTKLELPGYFTYLAQNPASSKRGGVATIVNSSLRHMAL 99
Query: 331 LPSHSNCFSVIAAIV--------DGICFVSIYVPHPSLQI----FNEIKNLISVL---PR 197
P C ++ + I S+Y P PSL F ++ N
Sbjct: 100 EPIEKECIQSAPIVLLPENNRRSEMIVIASVYCP-PSLSWSPHHFTDVLNFAEKTMGGQT 158
Query: 196 PFMILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLC-ILNSGSPTRLT-KPGEVISAID 23
++ GD+N+ H WG + G L D + S+ I+ +GS T + SAID
Sbjct: 159 KLILCGDWNAKHRQWGCIRACQRGAALYDAIQADSMAEIVATGSATHFPHDTRKSPSAID 218
Query: 22 LSIC 11
SIC
Sbjct: 219 FSIC 222
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 33.9 bits (74), Expect = 0.13
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 3/106 (2%)
Frame = -2
Query: 319 SNCFSVIAAIVDGICFVSI-YVPHPSLQIFNEIKNLISVLPRPFMILGDFNSHHTSWGSS 143
+N S + I C S+ ++PH + N + + + F++ GD+N+ H WG +
Sbjct: 106 NNRRSEMIVIASVYCPPSLRWLPHHFTDVLNFAEKTLGGQTK-FILCGDWNAKHRQWGCT 164
Query: 142 VSNSYGYELLDILDMYSLC-ILNSGSPTRLT-KPGEVISAIDLSIC 11
+ G L + + S I+ +G T + SAID SIC
Sbjct: 165 RACQRGTALYEAVQADSTAEIIATGCATHFPHDTRKNPSAIDFSIC 210
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 32.7 bits (71), Expect = 0.30
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Frame = -2
Query: 241 QIFNEIKNLISVLPRPFMILGDFNSHHTSWGSSVSNSYGYEL-LDILDMYSLCILNSGSP 65
++FN + L+ + F++ GD+N H WG+ +S + G L IL L I+ +G
Sbjct: 137 KLFNHFEMLLDGKSK-FILGGDWNCKHRLWGNYLSCARGRSLSQSILARKDLDIVATGHA 195
Query: 64 TRLT-KPGEVISAIDLSIC 11
T + SA+D +IC
Sbjct: 196 THFPFDKKKQPSALDFAIC 214
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 32.7 bits (71), Expect = 0.30
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Frame = -2
Query: 241 QIFNEIKNLISVLPRPFMILGDFNSHHTSWGSSVSNSYGYEL-LDILDMYSLCILNSGSP 65
++FN + L+ + F++ GD+N H WG+ +S + G L IL L I+ +G
Sbjct: 137 KLFNHFEMLLDGKSK-FILGGDWNCKHRLWGNYLSCARGRSLSQSILARKDLDIVATGHA 195
Query: 64 TRLT-KPGEVISAIDLSIC 11
T + SA+D +IC
Sbjct: 196 THFPFDKKKQPSALDFAIC 214
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 32.7 bits (71), Expect = 0.30
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Frame = -2
Query: 241 QIFNEIKNLISVLPRPFMILGDFNSHHTSWGSSVSNSYGYEL-LDILDMYSLCILNSGSP 65
++FN + L+ + F++ GD+N H WG+ +S + G L IL L I+ +G
Sbjct: 137 KLFNHFEMLLDGKSK-FILGGDWNCKHRLWGNYLSCARGRSLSQSILARKDLDIVATGHA 195
Query: 64 TRLT-KPGEVISAIDLSIC 11
T + SA+D +IC
Sbjct: 196 THFPFDKKKQPSALDFAIC 214
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 31.9 bits (69), Expect = 0.53
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Frame = -2
Query: 319 SNCFSVIAAIVDGICFVSI-YVPHPSLQIFNEIKNLISVLPRPFMILGDFNSHHTSWGSS 143
+N S + I C S+ + PH + N + + + F++ GD+N+ H WG +
Sbjct: 106 NNRRSEMIVIASVYCPPSLSWSPHHFTDVLNFAEKTLGGQTK-FILCGDWNAKHRQWGCT 164
Query: 142 VSNSYGYELLDILDMYSLC-ILNSGSPTRLT-KPGEVISAIDLSIC 11
+ G L + + + I+ +G T + SAID SIC
Sbjct: 165 RACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFSIC 210
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 31.9 bits (69), Expect = 0.53
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Frame = -2
Query: 319 SNCFSVIAAIVDGICFVSI-YVPHPSLQIFNEIKNLISVLPRPFMILGDFNSHHTSWGSS 143
+N S + I C S+ + PH + N + + + F++ GD+N+ H WG +
Sbjct: 106 NNRRSEMIVIASVYCPPSLSWSPHHFTDVLNFAEKTLGGQTK-FILCGDWNAKHRQWGCT 164
Query: 142 VSNSYGYELLDILDMYSLC-ILNSGSPTRLT-KPGEVISAIDLSIC 11
+ G L + + + I+ +G T + SAID SIC
Sbjct: 165 RACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFSIC 210
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 31.9 bits (69), Expect = 0.53
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Frame = -2
Query: 319 SNCFSVIAAIVDGICFVSI-YVPHPSLQIFNEIKNLISVLPRPFMILGDFNSHHTSWGSS 143
+N S + I C S+ + PH + N + + + F++ GD+N+ H WG +
Sbjct: 68 NNRRSEMIVIASVYCPPSLSWSPHHFTDVLNFAEKTLGGQTK-FILCGDWNAKHRQWGCT 126
Query: 142 VSNSYGYELLDILDMYSLC-ILNSGSPTRLT-KPGEVISAIDLSIC 11
+ G L + + + I+ +G T + SAID SIC
Sbjct: 127 RACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFSIC 172
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 31.9 bits (69), Expect = 0.53
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Frame = -2
Query: 319 SNCFSVIAAIVDGICFVSI-YVPHPSLQIFNEIKNLISVLPRPFMILGDFNSHHTSWGSS 143
+N S + I C S+ + PH + N + + + F++ GD+N+ H WG +
Sbjct: 106 NNRRSEMIVIASVYCPPSLSWSPHHFTDVLNFAEKTLGGQTK-FILCGDWNAKHRQWGCT 164
Query: 142 VSNSYGYELLDILDMYSLC-ILNSGSPTRLT-KPGEVISAIDLSIC 11
+ G L + + + I+ +G T + SAID SIC
Sbjct: 165 RACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFSIC 210
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 31.5 bits (68), Expect = 0.70
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = -2
Query: 256 PHPSLQIFNEIKNLISVLPRPFMILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLC-IL 80
PH + N + + + F++ GD+N+ H WG + + G L + + + I+
Sbjct: 12 PHHFTDVLNFAEKTLGGQTK-FILCGDWNAKHRQWGCTRACQRGTALYEAVQADPMAEII 70
Query: 79 NSGSPTRLT-KPGEVISAIDLSIC 11
+G T + SAID SIC
Sbjct: 71 ATGCATHFPHDTRKNPSAIDFSIC 94
>AE014134-3392|AAF53993.2| 241|Drosophila melanogaster CG2042-PA
protein.
Length = 241
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = -2
Query: 181 GDFNSHHTSWGSSVSNSYGYELLDILDMYSLCILNSGSPTRLTKPGEVIS 32
GD+N+ H WG+ N G L +++ + L +G P R + + ++
Sbjct: 57 GDWNTSHWLWGAERCNRRGRALANLVLSTGMSSLVTGGPKRFQEAVDTLT 106
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,073,783
Number of Sequences: 53049
Number of extensions: 419295
Number of successful extensions: 884
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1887744768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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