Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10o02r
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.03 |cgs1||cAMP-dependent protein kinase regulatory subun...    30   0.37 
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    25   7.9  

>SPAC8C9.03 |cgs1||cAMP-dependent protein kinase regulatory subunit
           Cgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 412

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
 Frame = -2

Query: 181 PKEPQDLKWPKRSI---FAFDVQMDEHYN 104
           PK+P+DLK  KRS+   F F    +EHYN
Sbjct: 125 PKDPEDLKRLKRSVAGNFLFKNLDEEHYN 153


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = -3

Query: 669 AHSRAAVDVLVFGNARQFSGNEPLLREAGPRLLHRTEDGRLVLAGERRVARETGRVYAHT 490
           AH R + +++ +G   QF+  + LL    P +    EDG L+L    R+ ++   V  H+
Sbjct: 142 AHCRFSPEIVDWGFT-QFAELKKLLCRQAPDVPPIVEDGALLLTAYVRILKDPTGVLWHS 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,710,269
Number of Sequences: 5004
Number of extensions: 53370
Number of successful extensions: 117
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)