Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10o02r
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0637 + 4767021-4767083,4767175-4767249,4767339-4767500,476...    83   2e-16
04_01_0238 - 3095098-3095466,3097496-3097526,3098082-3098527           28   6.2  
07_03_0864 - 22115997-22116056,22116293-22116505,22116863-221172...    28   8.2  
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485...    28   8.2  
01_01_1010 - 7996921-7997673,7999212-7999399,7999688-7999784,800...    28   8.2  

>07_01_0637 +
           4767021-4767083,4767175-4767249,4767339-4767500,
           4767624-4767702,4767922-4768076,4768225-4768288,
           4768928-4769007,4769366-4769431,4769932-4769982,
           4770087-4770238,4770270-4770287,4770323-4770413,
           4771156-4771236,4771330-4771407,4772315-4772350,
           4772425-4772468,4772567-4772645,4773035-4773125,
           4773268-4773374
          Length = 523

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 37/71 (52%), Positives = 51/71 (71%)
 Frame = -1

Query: 698 IDVGQVGVNVPIPVPLSMFSFSGTRGSFLGTNHFCGKQGLDFYTELKTVVSFWRESDVSH 519
           I+ GQVG+NVPIPVPL  FSF+G++ SF G  +F GK G+ F+T++KTV   W+ES    
Sbjct: 454 IEAGQVGINVPIPVPLPFFSFTGSKASFAGDLNFYGKAGVQFFTQIKTVTQQWKESPAQ- 512

Query: 518 AKPAVSMPTQQ 486
            + ++SMPT Q
Sbjct: 513 -RVSLSMPTSQ 522


>04_01_0238 - 3095098-3095466,3097496-3097526,3098082-3098527
          Length = 281

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +3

Query: 399 RSVALKKIVQKPSSNNSKD 455
           R VA+KKI +KPS  N KD
Sbjct: 55  REVAVKKIFRKPSGENHKD 73


>07_03_0864 -
           22115997-22116056,22116293-22116505,22116863-22117291,
           22117407-22117508,22117599-22117691,22117802-22117996
          Length = 363

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = +3

Query: 126 TSKAKIDLLGHFKSCGSFGHESTRVGTNYHTANFCRVVVTQLKGWGELF 272
           +++  + +LGH +S  S    +T VG+  ++A+  R  +   + WG  F
Sbjct: 299 SAETPVTVLGHHRSASSESERTTTVGSAANSADAKRRCMGPPRQWGASF 347


>05_03_0235 -
           10747649-10748118,10748226-10748314,10748477-10748574,
           10748934-10749046,10749107-10749200,10749557-10749589,
           10749734-10749851,10750110-10750210,10751036-10751233,
           10751337-10751471,10751752-10751830,10753650-10753738,
           10753835-10753987,10754100-10754285
          Length = 651

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 606 RSQKTAARSRKREHRQRHGNGHVDAH 683
           R QK        +HR RHG+ H D H
Sbjct: 529 RHQKGRHHRHHHDHRHRHGHSHGDHH 554


>01_01_1010 -
           7996921-7997673,7999212-7999399,7999688-7999784,
           8000420-8000767,8001130-8001231,8001432-8001501,
           8001747-8001802,8001891-8002010
          Length = 577

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 404 GAKFSFQFYRKCLVIFKWHRNLFVKKCIS 318
           G +F + F++ C V+F+W   L V  C+S
Sbjct: 486 GRRF-WSFFQACPVVFRWLTRLTVDDCLS 513


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,842,323
Number of Sequences: 37544
Number of extensions: 319231
Number of successful extensions: 847
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)