Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10o02r
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                  61   7e-10
SB_39674| Best HMM Match : Recep_L_domain (HMM E-Value=7.1)            29   3.6  

>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 505

 Score = 61.3 bits (142), Expect = 7e-10
 Identities = 25/33 (75%), Positives = 30/33 (90%)
 Frame = -1

Query: 683 VGVNVPIPVPLSMFSFSGTRGSFLGTNHFCGKQ 585
           +G+NVPIPVPL MFSF+G+RGSFLG +HF GKQ
Sbjct: 1   IGINVPIPVPLPMFSFTGSRGSFLGDSHFYGKQ 33


>SB_39674| Best HMM Match : Recep_L_domain (HMM E-Value=7.1)
          Length = 390

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -2

Query: 493 HNNSLIKKKKVLISFELFEEGFCTIFFK 410
           +N+S +  KKVL SF+  E+G C + F+
Sbjct: 231 NNSSRVVLKKVLDSFKYIEDGLCYVNFR 258


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,762,212
Number of Sequences: 59808
Number of extensions: 386727
Number of successful extensions: 791
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)