Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10o02r
         (698 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578801-1|AAT07306.1|  506|Anopheles gambiae dSmad2 protein.          25   3.0  
AJ439060-18|CAD27769.1|  257|Anopheles gambiae hypothetical prot...    24   5.3  
DQ974166-1|ABJ52806.1|  494|Anopheles gambiae serpin 6 protein.        23   7.0  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            23   7.0  
AY785360-1|AAV52864.1|  759|Anopheles gambiae male-specific tran...    23   9.2  

>AY578801-1|AAT07306.1|  506|Anopheles gambiae dSmad2 protein.
          Length = 506

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 210 YHTANFCRVVVTQLKGWGELFRR 278
           Y     C + ++ +KGWG  +RR
Sbjct: 445 YQLTRMCTIRMSFVKGWGAEYRR 467


>AJ439060-18|CAD27769.1|  257|Anopheles gambiae hypothetical protein
           protein.
          Length = 257

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = -3

Query: 690 RSSGRQRAHS-RAAVDVLVFGNARQFSGNEPLLREAGPRLLHRTEDGRLVLAGERRVARE 514
           ++   +  HS RA   + +F   +    ++PL  E G  + HR +  R        +  +
Sbjct: 166 KADSPENCHSNRAEFLIAIFTTVQPMHASQPLRGETGNWVQHRAQRNR--TNNNNTIITD 223

Query: 513 TGRVYAH 493
           +G + +H
Sbjct: 224 SGHMRSH 230


>DQ974166-1|ABJ52806.1|  494|Anopheles gambiae serpin 6 protein.
          Length = 494

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = -3

Query: 657 AAVDVLV--FGNARQFSGNEPLL 595
           AA   LV   G+ RQF+GN P L
Sbjct: 451 AATSALVDRIGSQRQFNGNAPFL 473


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -1

Query: 602  HFCGKQGLDFYTEL-KTVVSFWRESD 528
            HF   QG+DF T L  T   F+ ES+
Sbjct: 1774 HFSSIQGIDFLTNLFPTQDGFYYESE 1799


>AY785360-1|AAV52864.1|  759|Anopheles gambiae male-specific
           transcription factor FRU-MB protein.
          Length = 759

 Score = 23.0 bits (47), Expect = 9.2
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +2

Query: 260 GRVISALLRH*HVCYPKKFS--*CTSLQTSSD 349
           G+V++ +  H HV +P +F    C +  T SD
Sbjct: 506 GKVVTHIRNHYHVHFPGRFECPLCRATYTRSD 537


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 668,480
Number of Sequences: 2352
Number of extensions: 12846
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71086350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)