Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10o02r
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49127-3|CAA88946.1|  523|Caenorhabditis elegans Hypothetical pr...    95   6e-20
U64844-12|AAB18312.4|  417|Caenorhabditis elegans Hypothetical p...    32   0.34 
AF016424-8|AAB65328.2|  467|Caenorhabditis elegans Hypothetical ...    28   5.6  
Z96047-3|CAB09412.1|  207|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>Z49127-3|CAA88946.1|  523|Caenorhabditis elegans Hypothetical
           protein F13D12.4a protein.
          Length = 523

 Score = 94.7 bits (225), Expect = 6e-20
 Identities = 41/68 (60%), Positives = 53/68 (77%)
 Frame = -1

Query: 698 IDVGQVGVNVPIPVPLSMFSFSGTRGSFLGTNHFCGKQGLDFYTELKTVVSFWRESDVSH 519
           +DVGQ+G+NVPIPVPL MFSF+G+RGSFLG  +F GK G+ FYT+ KTV  +W ES ++ 
Sbjct: 454 VDVGQIGINVPIPVPLPMFSFTGSRGSFLGDLNFYGKAGIQFYTQWKTVTQYWNES-LTE 512

Query: 518 AKPAVSMP 495
            KP +S P
Sbjct: 513 LKPQMSFP 520


>U64844-12|AAB18312.4|  417|Caenorhabditis elegans Hypothetical
           protein T22F3.10 protein.
          Length = 417

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 454 ILELFFF*LNYCCVGIDTAGF-ACDTSLSRQNETTVFSSV 570
           +L L FF L  CC+G+++ GF  C    SRQ    V +++
Sbjct: 309 MLSLSFFILTMCCIGVNSGGFYKCGVLHSRQFAHVVIAAI 348


>AF016424-8|AAB65328.2|  467|Caenorhabditis elegans Hypothetical
           protein F39G3.2 protein.
          Length = 467

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -3

Query: 657 AAVDVLVFGNARQFSGNEPLLREAGPRLLHR 565
           +AVD++V  + R+F GNE  +R  G  L +R
Sbjct: 344 SAVDIIVTHSIRRFIGNETTIRANGSLLHYR 374


>Z96047-3|CAB09412.1|  207|Caenorhabditis elegans Hypothetical
           protein DY3.3 protein.
          Length = 207

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/27 (59%), Positives = 18/27 (66%)
 Frame = +3

Query: 405 VALKKIVQKPSSNNSKDIRTFFFLIKL 485
           V LKK V+KPSS  SK  + F F IKL
Sbjct: 117 VQLKK-VEKPSSKCSKCQQNFLFFIKL 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,913,739
Number of Sequences: 27780
Number of extensions: 295163
Number of successful extensions: 646
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)