Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10o02f
(645 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha... 77 3e-15
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe... 76 4e-15
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|... 71 1e-13
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo... 61 2e-10
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 38 0.001
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po... 32 0.081
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos... 29 0.43
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub... 25 7.1
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 25 9.3
>SPAC139.05 |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 493
Score = 76.6 bits (180), Expect = 3e-15
Identities = 34/96 (35%), Positives = 58/96 (60%)
Frame = +1
Query: 151 YIDGQYVDSKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLTRQ 330
++ G+++ S E+ NPAT E+IG+V + + +E A+ AA A+KT+ T + R
Sbjct: 21 FVQGKWISSPNNKTFEVDNPATGEIIGKVADVSVEETKKAISAANEAFKTYKNFTHVQRS 80
Query: 331 QLMFKFARLLRENQSKLAAKITEEQGKTIADAEGDV 438
QL+ ++A L+ EN+ L +T E GK ++ AE +V
Sbjct: 81 QLLERWAELIMENKDDLVKMLTLENGKPLSQAEMEV 116
>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 76.2 bits (179), Expect = 4e-15
Identities = 51/167 (30%), Positives = 82/167 (49%), Gaps = 1/167 (0%)
Frame = +1
Query: 148 LYIDGQYVDSKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLTR 327
LYI+G++ S T W E +P+ EVI +V A + E+ A+ +AK A+KTW K +
Sbjct: 23 LYINGEWHKSAET-W-ETVDPSIEEVIAKVYLAGEKEIDYAVKSAKEAFKTWKKVPGSEK 80
Query: 328 QQLMFKFARLLRENQSKLAAKITEEQGK-TIADAEGDVLRGIQSVEHCCSITSLQLGDSI 504
+L+ K A L ++ LAA + GK +++A GDV I + +C G I
Sbjct: 81 GELLMKLAELTEKHADTLAAIEAMDSGKPLVSNARGDVDGTIALLRYCAGWADKIYGQVI 140
Query: 505 QNIAKDMDTHSYXVPLXXXXXXAAFNFPVMIPLWMFPPALVTGNTCI 645
+ + ++ P+ +N+P+ + W PAL GN CI
Sbjct: 141 PTGPEKL-AYAKRTPIGVCGQIVPWNYPLNMAGWKIAPALAAGN-CI 185
>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 503
Score = 71.3 bits (167), Expect = 1e-13
Identities = 44/169 (26%), Positives = 82/169 (48%), Gaps = 3/169 (1%)
Frame = +1
Query: 148 LYIDGQYVDSKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKT---WSKSTV 318
L+I+ Q+VDS +++ +P+T ++I V +A ++++ A+ A+ A++T W K +
Sbjct: 25 LFINNQHVDSVHGGRVKVYSPSTEKLICEVADADEEDVDIAVKVARAAFQTDAPWRKFSS 84
Query: 319 LTRQQLMFKFARLLRENQSKLAAKITEEQGKTIADAEGDVLRGIQSVEHCCSITSLQLGD 498
R + + + A + +N LA+ T + GK+I A GDV + G
Sbjct: 85 AQRGRCLSRLADCIEQNLEYLASIETLDNGKSITLARGDVQAAADCFRYYGGWADKDYGQ 144
Query: 499 SIQNIAKDMDTHSYXVPLXXXXXXAAFNFPVMIPLWMFPPALVTGNTCI 645
+I+ K ++ P+ +NFP ++ W PA+ GNT I
Sbjct: 145 TIETDIKRF-AYTRHEPIGVCGQIIPWNFPFLMCAWKIAPAVACGNTII 192
>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 500
Score = 60.9 bits (141), Expect = 2e-10
Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 6/177 (3%)
Frame = +1
Query: 133 APTTKLYIDGQYVD--SKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKT-- 300
AP L+IDG++V I L NPAT E+IG A+ ++ SA++ A +++
Sbjct: 18 APENSLFIDGKFVSPIEPAAKPIPLINPATEEIIGTCANASAKDVDSAVENAYNTFRSGI 77
Query: 301 WSKSTVLTRQQLMFKFARLLRENQSKLAAKITEEQGKTIADAEGDVLRGIQSVEHCCSIT 480
W+K R ++ K A+++RE + LA T GK A D+ E+ +
Sbjct: 78 WAKWPGKQRGLVLRKIAKMMREKRELLAGIDTINCGKPTPYALFDIDSCADMFEYYAEVA 137
Query: 481 SLQLGDSIQNIAKDMDTHSY--XVPLXXXXXXAAFNFPVMIPLWMFPPALVTGNTCI 645
+ + ++ P +NFP+ + LW PA+ +GN C+
Sbjct: 138 ETDNPTVKVPLPNNPGFCAFEKRFPRGVIGVITPWNFPLKMALWKLVPAIASGN-CV 193
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 38.3 bits (85), Expect = 0.001
Identities = 19/85 (22%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Frame = +1
Query: 208 PATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLTRQQLMFKFARLLRENQSKLAA 387
P ++G V + ++ ++ A+ A K W ++ R+ + + NQ K A
Sbjct: 10 PGDGSLLGEVKLFNKSDIDQSIILAEEAQKEWKSTSFAERRNFLKALKENIIRNQDKYAE 69
Query: 388 KITEEQGKTIADAE-GDVLRGIQSV 459
++ GKT+ DA G++L ++ +
Sbjct: 70 IACKDTGKTLVDAAFGEILVTLEKI 94
>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 296
Score = 31.9 bits (69), Expect = 0.081
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +1
Query: 202 TNPATNEVIG---RVPEATQDELTSALDAAKRAYKTWSKSTVLTR 327
T+ TNE++ ++ E +D L +L A+K YK WS+ L R
Sbjct: 5 TDMETNEILDQLDKIDERNEDILLKSLKASKCTYKPWSREEFLRR 49
>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 721
Score = 29.5 bits (63), Expect = 0.43
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +1
Query: 166 YVDSKTTNWIELTNPATNEVIGRV-PEATQDELTSALDAAKRAY 294
Y ++T W+EL NPA EV G + E + E T+++ A RA+
Sbjct: 498 YEPARTGEWMELLNPA--EVFGNIMVEYSYPECTTSVILALRAF 539
>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 462
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +1
Query: 178 KTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKT 300
KT NW ++TNP V + + EL ++ Y+T
Sbjct: 252 KTLNWYQVTNPTETLSEYSVEDIPESELNEMKLRHRKRYET 292
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 25.0 bits (52), Expect = 9.3
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 88 KSESQLVLRRSYSSSAPTTKLYIDGQYVDSKTTNWI 195
KS +LR++Y P+ +YIDG + + TNW+
Sbjct: 1141 KSTLVELLRKTY----PSEDIYIDGYPLTNIDTNWL 1172
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,597,418
Number of Sequences: 5004
Number of extensions: 50039
Number of successful extensions: 129
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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