Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10o02f
(645 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0637 + 4767021-4767083,4767175-4767249,4767339-4767500,476... 182 2e-46
08_02_0811 + 21438848-21439001,21439469-21439662,21439769-214398... 76 3e-14
06_01_1105 + 9102059-9102167,9103770-9103907,9104125-9104267,910... 73 2e-13
06_03_0627 + 22903346-22903523,22906010-22906152,22906235-229066... 71 8e-13
02_05_0620 - 30412004-30412429,30412509-30412646,30412729-304128... 70 1e-12
04_04_0154 - 23146445-23146535,23146689-23146795,23146933-231469... 70 2e-12
01_05_0545 + 23109920-23110040,23113363-23113505,23113626-231140... 65 5e-11
02_01_0550 + 4044683-4044784,4044862-4044975,4045277-4045360,404... 60 1e-09
01_05_0544 + 23098921-23098953,23099209-23099272,23099942-231000... 54 7e-08
07_03_1752 - 29218348-29218524,29218593-29218736,29218957-292191... 51 7e-07
09_04_0272 - 16278136-16278289,16278873-16278970,16279090-162792... 48 6e-06
07_03_1755 - 29235650-29235754,29236432-29236525,29236710-292368... 48 6e-06
05_06_0214 - 26425100-26425922,26426008-26426058,26426183-264262... 30 1.4
04_04_0161 + 23203786-23203848,23204141-23204180,23204865-232050... 29 3.2
09_01_0087 + 1245890-1246565,1247409-1247484,1247774-1247893,124... 29 4.2
04_03_0351 - 14761728-14763086,14764742-14764957 29 4.2
07_03_1725 + 29058788-29058932,29059576-29059709 28 5.5
08_02_0731 - 20483518-20484154,20484182-20484375,20484541-204846... 27 9.7
03_05_0882 + 28467691-28467730,28468386-28468675,28469262-284694... 27 9.7
>07_01_0637 +
4767021-4767083,4767175-4767249,4767339-4767500,
4767624-4767702,4767922-4768076,4768225-4768288,
4768928-4769007,4769366-4769431,4769932-4769982,
4770087-4770238,4770270-4770287,4770323-4770413,
4771156-4771236,4771330-4771407,4772315-4772350,
4772425-4772468,4772567-4772645,4773035-4773125,
4773268-4773374
Length = 523
Score = 182 bits (443), Expect = 2e-46
Identities = 81/174 (46%), Positives = 114/174 (65%)
Frame = +1
Query: 124 SSSAPTTKLYIDGQYVDSKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKTW 303
+SS P +L I G++V+S+ +++TNPAT EV+ R+P T DE +A+DAA+ A+ W
Sbjct: 18 ASSPPRVRLLIGGEFVESRADEHVDVTNPATQEVVSRIPLTTADEFRAAVDAARTAFPGW 77
Query: 304 SKSTVLTRQQLMFKFARLLRENQSKLAAKITEEQGKTIADAEGDVLRGIQSVEHCCSITS 483
+ V TRQ++M K+ L+R N KLA IT EQGKT+ DA GDV RG++ VEH C + +
Sbjct: 78 RNTPVTTRQRIMLKYQELIRANMDKLAENITTEQGKTLKDAWGDVFRGLEVVEHACGMGT 137
Query: 484 LQLGDSIQNIAKDMDTHSYXVPLXXXXXXAAFNFPVMIPLWMFPPALVTGNTCI 645
LQ+G+ + N++ +DT S PL FNFP MIPLWMFP A+ GNT +
Sbjct: 138 LQMGEYVSNVSNGIDTFSIREPLGVCAGICPFNFPAMIPLWMFPIAVTCGNTFV 191
>08_02_0811 +
21438848-21439001,21439469-21439662,21439769-21439897,
21441552-21441671,21441751-21441887,21441969-21442124,
21442565-21442943,21443041-21443157,21443225-21443371
Length = 510
Score = 75.8 bits (178), Expect = 3e-14
Identities = 47/174 (27%), Positives = 82/174 (47%), Gaps = 7/174 (4%)
Frame = +1
Query: 145 KLYIDGQYVDSKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLT 324
+ Y DG++ S + + + NP T RV TQ+E+ ++ AK A K W+++ +
Sbjct: 20 RYYADGEWRVSASGKSVAIVNPTTRLTQYRVQACTQEEVNKVMETAKVAQKAWARTPLWK 79
Query: 325 RQQLMFKFARLLRENQSKLAAKITEEQGKTIADAEGDVLRGIQSVEHCC-------SITS 483
R +L+ K A +L+E+++ +A + +E K DA +V+R V +
Sbjct: 80 RAELLHKAAAILKEHKTPIAECLVKEIAKPAKDAISEVVRSGDLVSYTAEEGVRILGEGK 139
Query: 484 LQLGDSIQNIAKDMDTHSYXVPLXXXXXXAAFNFPVMIPLWMFPPALVTGNTCI 645
L + DS ++ S VPL FN+PV + + PAL+ GN +
Sbjct: 140 LLVSDSFPGNERNKYCLSSKVPLGVVLAIPPFNYPVNLAVSKIGPALIAGNALV 193
>06_01_1105 +
9102059-9102167,9103770-9103907,9104125-9104267,
9104362-9104515,9104610-9104839,9105382-9105471,
9105606-9105779,9105873-9106010,9106212-9106349,
9106450-9106511,9106744-9106972,9108531-9109364
Length = 812
Score = 72.9 bits (171), Expect = 2e-13
Identities = 48/174 (27%), Positives = 82/174 (47%), Gaps = 6/174 (3%)
Frame = +1
Query: 142 TKLYIDGQYVDSKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYK--TWSKST 315
T+L IDG++VDS + +P T E+I V E +++ A+ AA++A+ W K T
Sbjct: 69 TQLLIDGKFVDSASGKTFPTLDPRTGELIAHVAEGDAEDINRAVHAARKAFDEGPWPKMT 128
Query: 316 VLTRQQLMFKFARLLRENQSKLAAKITEEQGKTIADAEGDVLRGIQSVEHCCSITSLQLG 495
R +++ +FA L+ ++ ++AA T + GK A A + + + +
Sbjct: 129 AYERSRILLRFADLIEKHNDEIAALETWDNGKPYAQAANIEVPMVARLMRYYA----GWA 184
Query: 496 DSIQNIAKDMD-THSYXV---PLXXXXXXAAFNFPVMIPLWMFPPALVTGNTCI 645
D I + D H V P+ +NFP+++ W PAL GNT +
Sbjct: 185 DKIHGLVVPADGPHHVQVLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTVV 238
>06_03_0627 +
22903346-22903523,22906010-22906152,22906235-22906618,
22906980-22907069,22907147-22907320,22907414-22907551,
22907719-22907856,22907958-22908019,22908240-22908513
Length = 526
Score = 70.9 bits (166), Expect = 8e-13
Identities = 44/171 (25%), Positives = 88/171 (51%), Gaps = 3/171 (1%)
Frame = +1
Query: 142 TKLYIDGQYVDSKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYK--TWSKST 315
TKL+I+G++VD+ + E +P T +VI RV E ++++ A+ AA+ A+ W + +
Sbjct: 46 TKLFINGRFVDAASGKTFETRDPRTGDVIARVAEGDKEDVDLAVKAAREAFDHGEWPRMS 105
Query: 316 VLTRQQLMFKFARLLRENQSKLAAKITEEQGKTIADAEG-DVLRGIQSVEHCCSITSLQL 492
R ++M K+A ++ + +LAA + + GK +A A DV + + +
Sbjct: 106 GSERGRVMAKYAEVVERHADELAALESLDAGKPLAAARAVDVGECVGILRYFAGAADKIH 165
Query: 493 GDSIQNIAKDMDTHSYXVPLXXXXXXAAFNFPVMIPLWMFPPALVTGNTCI 645
G++++ +++ + ++ PL +NFP ++ PAL G T +
Sbjct: 166 GETLK-MSRQLQGYTLREPLGVAGLIVPWNFPAIMFFSKVSPALAAGCTVV 215
>02_05_0620 -
30412004-30412429,30412509-30412646,30412729-30412866,
30412966-30413139,30413211-30413684,30413775-30413917,
30414002-30414160,30414943-30415042
Length = 583
Score = 70.1 bits (164), Expect = 1e-12
Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 6/174 (3%)
Frame = +1
Query: 142 TKLYIDGQYVDSKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYK--TWSKST 315
TKL I+G +VD+ + +P T +VI RV E +++ A+ AA+RA+ W + T
Sbjct: 73 TKLLINGNFVDAASGKTFATVDPRTGDVIARVAEGDAEDVNRAVAAARRAFDEGPWPRMT 132
Query: 316 VLTRQQLMFKFARLLRENQSKLAAKITEEQGKTIADAEGDVLRGIQSVEHCCSITSLQLG 495
R +++ +FA L+ ++ ++AA T + GKT+ G + +
Sbjct: 133 AYERCRVLLRFADLIEQHADEIAALETWDGGKTLEQTTGTEVPMVARYMRYYG----GWA 188
Query: 496 DSIQNIAKDMD-THSYXV---PLXXXXXXAAFNFPVMIPLWMFPPALVTGNTCI 645
D I + D H V P+ +NFP+++ W PAL GN +
Sbjct: 189 DKIHGLVVPADGPHHVQVLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNAVV 242
>04_04_0154 -
23146445-23146535,23146689-23146795,23146933-23146993,
23147070-23147221,23147306-23147383,23147696-23147809,
23147880-23147956,23148128-23148194,23148341-23148406,
23148528-23148651,23148733-23148825,23149446-23149594,
23149681-23149761,23150502-23150644,23150758-23150872
Length = 505
Score = 69.7 bits (163), Expect = 2e-12
Identities = 46/181 (25%), Positives = 84/181 (46%), Gaps = 8/181 (4%)
Frame = +1
Query: 127 SSAPTTKLYIDGQYVDSKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAY---- 294
S+ P L+I G + + + + NPAT IG +P AT +++ A+ AA+ A+
Sbjct: 5 SAIPRRGLFIGGGWREPSLGRRLPVVNPATEATIGDIPAATAEDVELAVSAARDAFGRDG 64
Query: 295 -KTWSKSTVLTRQQLMFKFARLLRENQSKLAAKITEEQGKTIADAEGDVLRGIQSVEHCC 471
+ WS++ R + + A +++ +S LA T + GK + +A GD+ E+
Sbjct: 65 GRHWSRAPGAVRAKYLKAIAAKIKDKKSYLALLETLDSGKPLDEAAGDMEDVAACFEYYA 124
Query: 472 SITSLQLGDSIQNIAKDMDT-HSYXV--PLXXXXXXAAFNFPVMIPLWMFPPALVTGNTC 642
+ G I+ M+ SY + P+ +N+P+++ W PAL G T
Sbjct: 125 DLAEALDGKQRAPISLPMENFESYVLKEPIGVVGLITPWNYPLLMATWKVAPALAAGCTA 184
Query: 643 I 645
+
Sbjct: 185 V 185
>01_05_0545 +
23109920-23110040,23113363-23113505,23113626-23114009,
23114106-23114219,23114310-23114483,23114608-23114745,
23114884-23115021,23115094-23115155,23115268-23115541
Length = 515
Score = 64.9 bits (151), Expect = 5e-11
Identities = 42/171 (24%), Positives = 84/171 (49%), Gaps = 3/171 (1%)
Frame = +1
Query: 142 TKLYIDGQYVDSKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYK--TWSKST 315
TKL+I+G++VD+ + + +P T +V+ + EA + ++ A+ AA+ A++ W + +
Sbjct: 27 TKLFINGEFVDAASGKTFKTRDPRTGDVLAHIAEADKADVDLAVKAAREAFEHGKWPRMS 86
Query: 316 VLTRQQLMFKFARLLRENQSKLAAKITEEQGKTIADAE-GDVLRGIQSVEHCCSITSLQL 492
R ++M K A L+ ++ +LAA + GK + + D+ Q + +
Sbjct: 87 GYERSRVMNKLADLVEQHADELAALDGADAGKLLTLGKIIDMPAAAQMMRYYAGAADKIH 146
Query: 493 GDSIQNIAKDMDTHSYXVPLXXXXXXAAFNFPVMIPLWMFPPALVTGNTCI 645
G+S++ +A ++ P+ +NFP M+ PAL G T +
Sbjct: 147 GESLR-VAGKYQGYTLREPIGVVGVIIPWNFPTMMFFLKVSPALAAGCTIV 196
>02_01_0550 +
4044683-4044784,4044862-4044975,4045277-4045360,
4045818-4045917,4046923-4046971,4047071-4047158,
4047251-4047361,4047771-4047833,4047942-4048052,
4048517-4048582,4048689-4048766,4049553-4049630,
4049784-4049850,4049930-4050015,4050301-4050333,
4050426-4050458,4050754-4050854,4050986-4051071,
4051478-4051584,4051683-4051839,4051854-4051984
Length = 614
Score = 60.1 bits (139), Expect = 1e-09
Identities = 40/147 (27%), Positives = 64/147 (43%)
Frame = +1
Query: 205 NPATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLTRQQLMFKFARLLRENQSKLA 384
NPAT E + V E + A+ +A + +WSK T R + + K+ L+ ++ +LA
Sbjct: 103 NPATGETLANVSCMGSKETSDAIASAHSTFYSWSKLTANERSKALRKWHDLIISHKEELA 162
Query: 385 AKITEEQGKTIADAEGDVLRGIQSVEHCCSITSLQLGDSIQNIAKDMDTHSYXVPLXXXX 564
+T EQGK + +A +V G +E+ GD I D P+
Sbjct: 163 LLMTLEQGKPMKEALVEVTYGASFIEYFAEEAKRIYGDIIPPTLSDRRLLVLKQPVGVVG 222
Query: 565 XXAAFNFPVMIPLWMFPPALVTGNTCI 645
+NFP+ + PAL G T +
Sbjct: 223 AVTPWNFPLAMITRKVGPALACGCTVV 249
>01_05_0544 +
23098921-23098953,23099209-23099272,23099942-23100084,
23100246-23100719,23100950-23101123,23101230-23101367,
23101489-23101589,23101910-23102183
Length = 466
Score = 54.4 bits (125), Expect = 7e-08
Identities = 36/153 (23%), Positives = 73/153 (47%), Gaps = 3/153 (1%)
Frame = +1
Query: 196 ELTNPATNEVIGRVPEATQDELTSALDAAKRAYK--TWSKSTVLTRQQLMFKFARLLREN 369
E +P T EVI ++ E + ++ A+ AA+ A+ W + + R +++ KFA L+ ++
Sbjct: 37 ETRDPRTGEVIAKIAEGDKADIDLAVKAAREAFDHGPWPRMSGFARGRILHKFADLVEQH 96
Query: 370 QSKLAAKITEEQGKTIADAE-GDVLRGIQSVEHCCSITSLQLGDSIQNIAKDMDTHSYXV 546
+LAA T + GK A + D+ G + + G++++ +A+ ++
Sbjct: 97 VEELAALDTVDAGKLFAMGKLVDIPGGANLLRYYAGAADKVHGETLK-MARPCHGYTLKE 155
Query: 547 PLXXXXXXAAFNFPVMIPLWMFPPALVTGNTCI 645
P+ +N+P + + PAL G T +
Sbjct: 156 PVGVVGHIVPWNYPTTMFFFKASPALAAGCTMV 188
>07_03_1752 -
29218348-29218524,29218593-29218736,29218957-29219148,
29219225-29219440,29219873-29220010,29220137-29220232,
29221204-29221357,29221976-29222098,29222291-29222418,
29222669-29222773,29223396-29223437,29223631-29223746,
29223805-29223916
Length = 580
Score = 51.2 bits (117), Expect = 7e-07
Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Frame = +1
Query: 184 TNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLTRQQLMFKFARLLR 363
T+ ++ PAT + +G P T DE+ + A++A K W+KS+ R+Q + + +
Sbjct: 101 TDKVQCYEPATMKYLGYFPALTPDEVKEHVAQARKAQKIWAKSSFKQRRQFLRILLKYIL 160
Query: 364 ENQSKLAAKITEEQGKTIADAE-GDVLRGIQSV 459
E+Q + + + GKT+ DA G+++ + +
Sbjct: 161 EHQDLICEISSRDTGKTMVDASLGEIMTTCEKI 193
>09_04_0272 -
16278136-16278289,16278873-16278970,16279090-16279230,
16279701-16279865,16279941-16280117,16280330-16280510,
16280784-16280829,16281178-16281241,16281331-16281353,
16281964-16282036,16282410-16282541,16283343-16283429,
16283488-16283700
Length = 517
Score = 48.0 bits (109), Expect = 6e-06
Identities = 42/144 (29%), Positives = 59/144 (40%), Gaps = 3/144 (2%)
Frame = +1
Query: 223 VIGRVPEATQDELTSALDAAKRAYKTWSKSTVLTRQQLMFKFARLLRENQSKLAAKITEE 402
VI V EA+ E + A A KTW R +++ + LR L ++ E
Sbjct: 72 VIAEVVEASAREYEEGMRACYDAAKTWMAIPAPKRGEIVRQIGDALRAKLHHLGRLVSLE 131
Query: 403 QGKTIADAEGDVLRGIQSVEHCCSITSLQLGDSIQNIAKDMDTHSYXV---PLXXXXXXA 573
GK + + G+V I ++ + S QL SI I + H PL
Sbjct: 132 MGKILPEGIGEVQEIIDMCDYAVGL-SRQLNGSI--IPSERPNHMMMEVWNPLGVVGVIT 188
Query: 574 AFNFPVMIPLWMFPPALVTGNTCI 645
AFNFP + W ALV GN C+
Sbjct: 189 AFNFPCAVLGWNACIALVCGN-CV 211
>07_03_1755 -
29235650-29235754,29236432-29236525,29236710-29236837,
29237077-29237181,29237706-29237773,29237926-29238037
Length = 203
Score = 48.0 bits (109), Expect = 6e-06
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Frame = +1
Query: 184 TNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLTRQQLMFKFARLLR 363
T+ ++ PAT + +G P T DE+ + A++A K W+KS+ R Q + + +
Sbjct: 71 TDKVQCYEPATMKYLGYFPALTPDEVKEHVAQARKAQKIWAKSSSKQRCQFLRILLKYIL 130
Query: 364 ENQSKLAAKITEEQGKTIADAE-GDVL 441
E+Q + + GKT+ DA G+++
Sbjct: 131 EHQDLICEISPRDTGKTMVDASLGEIM 157
>05_06_0214 -
26425100-26425922,26426008-26426058,26426183-26426256,
26426344-26426441,26426547-26426671,26426724-26426957,
26426992-26427037,26427101-26427152,26427331-26427367,
26427521-26427637,26428287-26428352,26428439-26428518,
26429102-26429311,26429650-26429739,26430093-26430182,
26430280-26430411,26430876-26431094,26431203-26431286,
26431543-26431656,26431857-26431914,26432535-26432602,
26432847-26432962,26433495-26433574,26433839-26433912
Length = 1045
Score = 30.3 bits (65), Expect = 1.4
Identities = 38/171 (22%), Positives = 67/171 (39%), Gaps = 10/171 (5%)
Frame = +1
Query: 154 IDGQYVDSKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLTRQQ 333
+ G + S NW L +P E +V E + E+ +++ K + + ++
Sbjct: 56 VQGSWTTSGNWNW--LVDPLNGEKFIKVAEVQEAEIKPFVESLSNCPKHGLHNPLKAPER 113
Query: 334 -LMF-----KFARLLRENQ-SKLAAKITEEQG-KTIADAEGDVLRGIQSVEHCCS--ITS 483
LM+ K A +L + S AK+ + K+ A +V + +E+ C +
Sbjct: 114 YLMYGDISAKAANMLGQPVVSDFFAKLIQRVSPKSYQQALAEVQVSQKFLENFCGDQVRF 173
Query: 484 LQLGDSIQNIAKDMDTHSYXVPLXXXXXXAAFNFPVMIPLWMFPPALVTGN 636
L ++ ++ Y P FNFP+ IPL AL GN
Sbjct: 174 LARSFAVPGNHLGQSSNGYRWPYGPVAIITPFNFPLEIPLLQLMGALYMGN 224
>04_04_0161 +
23203786-23203848,23204141-23204180,23204865-23205016,
23205270-23205406,23206356-23206396,23206500-23207098,
23207599-23207679,23208146-23208208,23209141-23209197
Length = 410
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 199 LTNPATNEVIGRVPEATQDELTSALDAAKRAYKTWS 306
L P T+ + R+P A + LD+++ AY +WS
Sbjct: 221 LPEPRTSALPSRIPSARSMDDLLKLDSSREAYSSWS 256
>09_01_0087 +
1245890-1246565,1247409-1247484,1247774-1247893,
1248927-1249002,1250767-1250835,1251019-1251099,
1251298-1251369,1251600-1251692,1251904-1252083,
1252558-1252641,1252729-1252872,1253089-1253178,
1255982-1256064,1256140-1256421,1256722-1256959,
1258307-1258957
Length = 1004
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 591 HREIEGCNTSNNSKWHLVAMRVHVFGDV 508
HRE CN + S W L A+ +HV V
Sbjct: 703 HREPSYCNADHASWWELTALALHVHPSV 730
>04_03_0351 - 14761728-14763086,14764742-14764957
Length = 524
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +1
Query: 229 GRVPEATQDELTSALDAAKRAYKTWSKSTVL--TRQQLMFKFARLLRE 366
G P+A ++E+ LD+ KRA+K W + R+Q +++ A L E
Sbjct: 29 GSTPQAVREEVDGFLDSRKRAFK-WEVGVCVRRLRKQALYRPALKLSE 75
>07_03_1725 + 29058788-29058932,29059576-29059709
Length = 92
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -2
Query: 221 SLVAGLVSSIQLVVFESTYCPSIYSFV 141
S+V GLVS+ + FEST PSI F+
Sbjct: 45 SIVPGLVSAQECNYFESTQIPSIRKFL 71
>08_02_0731 -
20483518-20484154,20484182-20484375,20484541-20484640,
20485282-20485622
Length = 423
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Frame = -3
Query: 307 CSMSYRPS---WLHPKRKSIHPELPLAPCQLL 221
C +RP WLHP R+S P P +P ++L
Sbjct: 269 CGHVHRPRLSRWLHPPRRSSSPVPPPSPRRIL 300
>03_05_0882 +
28467691-28467730,28468386-28468675,28469262-28469411,
28470126-28470214,28470331-28470440,28470545-28470639,
28471110-28471162,28471374-28471539,28471909-28472001,
28472304-28472432,28472549-28472668,28472862-28472942,
28473495-28473602,28473895-28474038,28474120-28474218,
28474300-28474379,28474830-28474922,28475197-28475320
Length = 687
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +1
Query: 349 ARLLRENQSKLAAKIT--EEQGKTIADAEGDVLRGIQSVEHCCSI 477
+ LL E + K+A EEQ K I E D+L+G S + S+
Sbjct: 412 SNLLEEAEKKIAELTAKAEEQQKLILKLEDDILKGYSSTDRRTSL 456
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,840,882
Number of Sequences: 37544
Number of extensions: 346075
Number of successful extensions: 963
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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