Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10o02f
(645 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5072| Best HMM Match : Aldedh (HMM E-Value=2.4e-14) 81 6e-16
SB_15907| Best HMM Match : Aldedh (HMM E-Value=3.2e-23) 73 2e-13
SB_12802| Best HMM Match : Aldedh (HMM E-Value=0) 66 2e-11
SB_25829| Best HMM Match : No HMM Matches (HMM E-Value=.) 63 2e-10
SB_57708| Best HMM Match : Aldedh (HMM E-Value=0) 57 1e-08
SB_37963| Best HMM Match : Aldedh (HMM E-Value=1.8e-16) 56 3e-08
SB_18188| Best HMM Match : SRP54 (HMM E-Value=0) 54 1e-07
SB_32909| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 9e-07
SB_52935| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_19612| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.80
SB_54535| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.80
SB_13735| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.80
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31) 31 1.1
SB_16513| Best HMM Match : Aldedh (HMM E-Value=9.9e-05) 31 1.1
SB_17852| Best HMM Match : MFS_1 (HMM E-Value=0.00068) 30 1.4
SB_58730| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_891| Best HMM Match : DUF1098 (HMM E-Value=0.47) 29 4.3
SB_27725| Best HMM Match : RVT_1 (HMM E-Value=1.9e-19) 28 7.5
SB_4444| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_51202| Best HMM Match : ThiS (HMM E-Value=3.2) 28 7.5
SB_37504| Best HMM Match : PIP5K (HMM E-Value=0) 27 9.9
SB_24791| Best HMM Match : FYVE (HMM E-Value=7.2e-14) 27 9.9
SB_24251| Best HMM Match : ubiquitin (HMM E-Value=0.1) 27 9.9
SB_59678| Best HMM Match : Lectin_C (HMM E-Value=3.3e-19) 27 9.9
SB_22517| Best HMM Match : UPF0081 (HMM E-Value=1) 27 9.9
>SB_5072| Best HMM Match : Aldedh (HMM E-Value=2.4e-14)
Length = 266
Score = 81.4 bits (192), Expect = 6e-16
Identities = 53/172 (30%), Positives = 86/172 (50%), Gaps = 8/172 (4%)
Frame = +1
Query: 154 IDGQYVDSKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAY--KTWSKSTVLTR 327
I Q+ D+ I++ NPAT EVI RVP A Q E+ A+ AA++A+ WS+ + R
Sbjct: 48 IGDQWCDAADGQTIQVLNPATAEVIARVPRAGQREIDRAVMAARQAFDDSPWSRIKPVER 107
Query: 328 QQLMFKFARLLRENQSKLAAKITEEQGKTIADAEG-DVLRGIQSVEHCCSITSLQLGDSI 504
Q+L++ FA L+ +N + LA + + GK+ AE D+ + + + + G ++
Sbjct: 108 QKLLWNFADLIEKNAALLAEIESIDNGKSAVIAEHVDIRLAVDFLRYMAGFATKIEGRTV 167
Query: 505 Q---NIAKDMDTHSYX--VPLXXXXXXAAFNFPVMIPLWMFPPALVTGNTCI 645
Q D H Y + A+NFP+++ W PAL TG T +
Sbjct: 168 QVSVPFMPDAQFHGYTRREAVGVVGAIVAWNFPLLLACWKLGPALATGCTTV 219
>SB_15907| Best HMM Match : Aldedh (HMM E-Value=3.2e-23)
Length = 275
Score = 73.3 bits (172), Expect = 2e-13
Identities = 38/165 (23%), Positives = 76/165 (46%)
Frame = +1
Query: 151 YIDGQYVDSKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLTRQ 330
YI G++V+ + ++ ++VIG +A + + +A+ AA + W KS + R
Sbjct: 9 YIAGEWVEGNKGSVANISPADISDVIGHYAQADKAQTEAAIAAAAAGQREWQKSGLEQRY 68
Query: 331 QLMFKFARLLRENQSKLAAKITEEQGKTIADAEGDVLRGIQSVEHCCSITSLQLGDSIQN 510
++ L + +L A + E+GKT+A+ G+ R Q + + Q+G++ ++
Sbjct: 69 SVLMAIGDELIARKDELGAILAREEGKTLAEGVGETYRSGQFFHYYAAEVLRQMGETAES 128
Query: 511 IAKDMDTHSYXVPLXXXXXXAAFNFPVMIPLWMFPPALVTGNTCI 645
+ ++ + P+ +NFP W PAL GN +
Sbjct: 129 VRPGIEIETRREPVGVVGIITPWNFPTATGAWKIAPALAFGNAIV 173
>SB_12802| Best HMM Match : Aldedh (HMM E-Value=0)
Length = 880
Score = 66.5 bits (155), Expect = 2e-11
Identities = 46/187 (24%), Positives = 87/187 (46%), Gaps = 6/187 (3%)
Frame = +1
Query: 103 LVLRRSYSSSA--PTTKL-YIDGQY---VDSKTTNWIELTNPATNEVIGRVPEATQDELT 264
LV R SS A P L ++DG + + + + +T+P+T + V + + E+
Sbjct: 257 LVPRPELSSDACTPCQNLNFVDGHRCNPITEEISGQMFITDPSTGHISCEVKGSGKTEVK 316
Query: 265 SALDAAKRAYKTWSKSTVLTRQQLMFKFARLLRENQSKLAAKITEEQGKTIADAEGDVLR 444
A+ +A++A+KTWS + R +++ +RL+R+ + +A + GK +A DV
Sbjct: 317 RAVLSARKAFKTWSVLSGSERGRILGDASRLVRKRREDIAKVEVHDNGKPFHEALWDVDN 376
Query: 445 GIQSVEHCCSITSLQLGDSIQNIAKDMDTHSYXVPLXXXXXXAAFNFPVMIPLWMFPPAL 624
+E+ + G +Q + ++ PL A+N+P+ W PA+
Sbjct: 377 VADVLEYYAGVAPTLSGQHVQ-LPNGSFAYTRREPLGVVGGIGAWNYPIQTACWKIAPAI 435
Query: 625 VTGNTCI 645
GNT +
Sbjct: 436 ACGNTIV 442
>SB_25829| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 826
Score = 63.3 bits (147), Expect = 2e-10
Identities = 44/181 (24%), Positives = 79/181 (43%), Gaps = 3/181 (1%)
Frame = +1
Query: 112 RRSYSSSAPTTKLYIDGQYVDSKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRA 291
+ +Y S +L+I+ ++VD + NP T E I + E ++++ A+ AAK A
Sbjct: 321 QHTYEGSG-AVELFINNEFVDCTSGKVFPTINPTTGEKICDISEGDKEDVDKAVKAAKEA 379
Query: 292 YK---TWSKSTVLTRQQLMFKFARLLRENQSKLAAKITEEQGKTIADAEGDVLRGIQSVE 462
+K W R +L++K A+L+ + + LA+ T + GK +D+ GD+
Sbjct: 380 FKLGSAWRTMDASMRGKLLYKLAQLIDRDIAYLASLETIDSGKLFSDSVGDMQSSANCFR 439
Query: 463 HCCSITSLQLGDSIQNIAKDMDTHSYXVPLXXXXXXAAFNFPVMIPLWMFPPALVTGNTC 642
+ G +I ++ P+ +NFP+ + PAL GN
Sbjct: 440 YYAGWADKVTGKTIPADGPYF-VYTRHEPVGLVGAITPWNFPLNMASVKIAPALACGNVV 498
Query: 643 I 645
I
Sbjct: 499 I 499
>SB_57708| Best HMM Match : Aldedh (HMM E-Value=0)
Length = 528
Score = 57.2 bits (132), Expect = 1e-08
Identities = 34/101 (33%), Positives = 58/101 (57%)
Frame = +1
Query: 103 LVLRRSYSSSAPTTKLYIDGQYVDSKTTNWIELTNPATNEVIGRVPEATQDELTSALDAA 282
+ L RS SS K Y+ G+++D +T + NPAT E +G+V E A+ A
Sbjct: 51 MALFRSQSSLI-RHKGYVGGKWLDGDST--FPVYNPATGEELGQVANMGAKEGELAVQEA 107
Query: 283 KRAYKTWSKSTVLTRQQLMFKFARLLRENQSKLAAKITEEQ 405
+A++TW K+T R + + K+ +L+ ++Q++LA +T EQ
Sbjct: 108 YKAFQTWKKTTAKERSEKLRKWFQLILQHQNELAELLTTEQ 148
>SB_37963| Best HMM Match : Aldedh (HMM E-Value=1.8e-16)
Length = 266
Score = 55.6 bits (128), Expect = 3e-08
Identities = 40/169 (23%), Positives = 85/169 (50%), Gaps = 4/169 (2%)
Frame = +1
Query: 151 YIDGQYVDSKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLTRQ 330
+I+G+++ +I+ +P+ EV +VP++ ++ + A+ AA A+K+WS S+ R
Sbjct: 14 FINGEFLSCD--RYIDSYDPSRGEVYCKVPDSGKEHVDLAVAAANAAFKSWSVSSPAYRA 71
Query: 331 QLMFKFARLLRENQSKLAAKITEEQGKTIADAEG-DVLRGIQSVEHCCSITSLQLG-DSI 504
+ + K A L+ + + A + +QGKT+ A D+ R ++ S ++ +G +S
Sbjct: 72 ERLRKLADLIEDRLEEFAQAESRDQGKTVNFARNVDIPRCCLNLRMFAS--AIMVGSNSR 129
Query: 505 QNIAKDMDTHSYXV--PLXXXXXXAAFNFPVMIPLWMFPPALVTGNTCI 645
N + +Y + P + +N P+ + + PA+ +G T +
Sbjct: 130 ANFLESQAVVNYSLRSPKGVAGLISPWNLPLYLLSFKIAPAVASGCTVV 178
>SB_18188| Best HMM Match : SRP54 (HMM E-Value=0)
Length = 410
Score = 54.0 bits (124), Expect = 1e-07
Identities = 23/38 (60%), Positives = 31/38 (81%)
Frame = +1
Query: 439 LRGIQSVEHCCSITSLQLGDSIQNIAKDMDTHSYXVPL 552
LR + VEH CSITSLQ+G+++ ++ KDMDT+SY VPL
Sbjct: 365 LRTEEVVEHTCSITSLQMGETMPSVTKDMDTYSYRVPL 402
>SB_32909| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1411
Score = 50.8 bits (116), Expect = 9e-07
Identities = 28/105 (26%), Positives = 55/105 (52%)
Frame = +1
Query: 139 TTKLYIDGQYVDSKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTV 318
T K+YI G + NP+ EVI +V + + ++ A++AA +A W K
Sbjct: 1147 TYKMYIGGAQKRPDGNYSRPILNPS-GEVIAQVADGNRKDIREAVEAAHKAASGWGKRAA 1205
Query: 319 LTRQQLMFKFARLLRENQSKLAAKITEEQGKTIADAEGDVLRGIQ 453
R Q+++ A L ++++AA+I++ G+++ + + +V IQ
Sbjct: 1206 HNRAQIVYYLAENLEMRRAEVAARISDMTGQSLDECKAEVDASIQ 1250
Score = 45.2 bits (102), Expect = 5e-05
Identities = 33/144 (22%), Positives = 64/144 (44%), Gaps = 2/144 (1%)
Frame = +1
Query: 220 EVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLTRQQLMFKFARLLRENQSKLAAKITE 399
EV+ + ++ A+ AA+ A+++WSK R + ++ AR ++++ +A +
Sbjct: 668 EVLASTTQGETQDIEDAVKAARTAFQSWSKLPGHARARHLYSIARHVQKHARLIAVLESM 727
Query: 400 EQGKTIADA-EGDVLRGIQSVEHCCSITSLQLGDSIQNIAKDMDTHSYX-VPLXXXXXXA 573
+ GK++ + + D+ + + H L MDT P+
Sbjct: 728 DNGKSVRETRDCDIPNVARHLYHHAGWAQL------------MDTEMQGWKPVGVVGGIV 775
Query: 574 AFNFPVMIPLWMFPPALVTGNTCI 645
+NFP+M+ W PAL GNT +
Sbjct: 776 PWNFPLMLLCWKVCPALAMGNTVV 799
>SB_52935| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1333
Score = 37.9 bits (84), Expect = 0.007
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +1
Query: 145 KLYIDGQYVDSKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAK 285
+L+I+G++VDS NP V+ +V AT +++ A+DAAK
Sbjct: 710 QLFINGEFVDSHHGKTFNTINPTDGTVLAQVSLATHEDVDDAVDAAK 756
>SB_19612| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 932
Score = 31.1 bits (67), Expect = 0.80
Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 19/116 (16%)
Frame = +1
Query: 118 SYSSSAPTTKL-----YIDGQYVDSKTTNWIELTNPATNEVIGRVPEATQDELTSA---- 270
SY S P T L +DG+ DSKT W+ IGR+P++ L
Sbjct: 348 SYIVSEPNTVLEQLHSLLDGKLKDSKTKRWVVSAMGKLVAQIGRIPDSVAGALAKCRADG 407
Query: 271 -LDAAKRAYKTWSKSTV-----LT-RQQLMFKFARLL---RENQSKLAAKITEEQG 408
+D + + + +V LT +++FK AR L R+NQ+ L +T +G
Sbjct: 408 DVDLRQSVFSCFDWGSVPALPLLTFSHRVVFKTARFLFRGRKNQALLLRAMTGFEG 463
>SB_54535| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 31.1 bits (67), Expect = 0.80
Identities = 15/52 (28%), Positives = 29/52 (55%)
Frame = +1
Query: 151 YIDGQYVDSKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKTWS 306
+I+G++V + ++ +P T EVI P++ + +A+ AAK A W+
Sbjct: 10 FINGEFVPGEDGVYMNDLSPTTGEVICTFPDSNVVDTENAIRAAKSAGIIWA 61
>SB_13735| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 31.1 bits (67), Expect = 0.80
Identities = 22/107 (20%), Positives = 42/107 (39%)
Frame = +1
Query: 325 RQQLMFKFARLLRENQSKLAAKITEEQGKTIADAEGDVLRGIQSVEHCCSITSLQLGDSI 504
R +++ + LRE + L ++ E GK + G++ I ++ ++ + G
Sbjct: 74 RGEVVRQIGHALREKLTPLGKLLSLEVGKIFPEGVGEIQEYIDVCDYAVGLSRMFDGKVF 133
Query: 505 QNIAKDMDTHSYXVPLXXXXXXAAFNFPVMIPLWMFPPALVTGNTCI 645
+ P+ AFNFPV + W ++ GN I
Sbjct: 134 PSERPGHALLEQWNPVGTVGVITAFNFPVAVFGWNTAISMTCGNVNI 180
>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
Length = 2122
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +1
Query: 343 KFARLLRENQSKLAAKITEEQGKTIADAEGDVLR--GIQSVEHCCSITSLQLGDS 501
++ LREN+ KL AKI E + K + A+ ++ IQ VE S + GDS
Sbjct: 1012 EYVEELRENRRKLEAKINELEQKLASQADIIPMQPIQIQQVESVQSAPDMDFGDS 1066
>SB_16513| Best HMM Match : Aldedh (HMM E-Value=9.9e-05)
Length = 301
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +1
Query: 205 NPATNEVIGRVPEATQDELTSALDAAKRAYKTWSKST 315
+PAT + +G+V + A++AA + ++TW K+T
Sbjct: 115 SPATGDELGQVSNMGAQQWELAVNAAYKEFQTWKKTT 151
>SB_17852| Best HMM Match : MFS_1 (HMM E-Value=0.00068)
Length = 256
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = -2
Query: 236 TLPITSLVAGLVSSIQLVVFESTYCPSIYSFVVGAELLYERRSTS 102
T PIT + L+S + L VF+ Y PS+YS + + + ER S S
Sbjct: 127 TSPITLV---LISRLALGVFQGIYYPSLYSLLAKSLPISERSSCS 168
>SB_58730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1014
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/58 (24%), Positives = 24/58 (41%)
Frame = +1
Query: 235 VPEATQDELTSALDAAKRAYKTWSKSTVLTRQQLMFKFARLLRENQSKLAAKITEEQG 408
+P T+ D K T+L LMF ++ +R N ++ K+T+ G
Sbjct: 791 IPFDTERHYHPEFDGYHPGIKVKQADTILIGYPLMFNMSKQIRRNDLEMYEKVTDRNG 848
>SB_891| Best HMM Match : DUF1098 (HMM E-Value=0.47)
Length = 715
Score = 28.7 bits (61), Expect = 4.3
Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 14/113 (12%)
Frame = +1
Query: 136 PTTKLYIDGQYVDSKTTNWIELTNPATNEV--------IGRVPEATQDEL-TSALDAAKR 288
P KL+ + + TN T+P +NE+ + ATQ +L TS A K
Sbjct: 417 PQMKLFDNSSALQENATNSQAATSPLSNELQVQQAAGSQAQQSSATQPQLETSVQPADKG 476
Query: 289 AYKTWSKSTVLTRQQLMFKFARLLRENQ-----SKLAAKITEEQGKTIADAEG 432
K S ST T Q++ L++ Q +LAA + ++ G I D G
Sbjct: 477 GTKEQSAST--TPQEMPEVLGEQLQQGQYNPGAQQLAATLPQQSGTLITDNHG 527
>SB_27725| Best HMM Match : RVT_1 (HMM E-Value=1.9e-19)
Length = 262
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 238 PEATQDELTSALDAAKRAYKTWSKSTVLTRQQLMFKFA 351
P++ + T A R+YK W S + TR+Q++ + A
Sbjct: 22 PDSGNNMSTVARAVRTRSYKCWCLSHIFTRKQVLIRTA 59
>SB_4444| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 357
Score = 27.9 bits (59), Expect = 7.5
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Frame = +3
Query: 429 GRCASRNSVSGALL*HHIASARRQHPKHRQRHGHA*LXGATWSCW---RCCSLQFP 587
GRC+SR+ S A H AS+R H + L G W +C SL P
Sbjct: 289 GRCSSRDLSSSASSQEHFASSRVSQQSSELHHLLSSLQGVHWRTGEIPKCASLVPP 344
>SB_51202| Best HMM Match : ThiS (HMM E-Value=3.2)
Length = 476
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/41 (26%), Positives = 25/41 (60%)
Frame = +3
Query: 33 RSVIINKLNHGIGDLKVIKI*IPARTASLI*QLCSNHKAVY 155
+S+ I ++ + + +I++ P +T ++I +CS H A+Y
Sbjct: 386 QSIAIIRVVYPAQSIAIIRVVYPGQTIAIIRVVCSGHIAIY 426
>SB_37504| Best HMM Match : PIP5K (HMM E-Value=0)
Length = 2119
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 513 RQRHGHA*LXGATWSCWRCCSLQFPG 590
R+RH H L G + C+RCC+++ PG
Sbjct: 147 RRRH-HCRLCGQIF-CYRCCNVEVPG 170
>SB_24791| Best HMM Match : FYVE (HMM E-Value=7.2e-14)
Length = 64
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 513 RQRHGHA*LXGATWSCWRCCSLQFPG 590
R+RH H L G + C+RCC+++ PG
Sbjct: 34 RRRH-HCRLCGQIF-CYRCCNVEVPG 57
>SB_24251| Best HMM Match : ubiquitin (HMM E-Value=0.1)
Length = 275
Score = 27.5 bits (58), Expect = 9.9
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = +1
Query: 76 LKLLKSESQLVLRRSYSSSAPTTKLYIDGQYVDSKTTNWIELTNPATNEVIGRVPEATQD 255
L L ++Q+ L ++S T + ID W E TN A N+V+ + D
Sbjct: 28 LDLFSFDNQIPL--TFSVPTSQTAISIDDSDDSDVDQGW-ERTNEAENDVVDLANSSEDD 84
Query: 256 ELTSAL 273
EL AL
Sbjct: 85 ELDQAL 90
>SB_59678| Best HMM Match : Lectin_C (HMM E-Value=3.3e-19)
Length = 951
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3
Query: 9 FAPCPPTSRSVIINK 53
+ PCPP SRSV+I K
Sbjct: 529 YRPCPPKSRSVVIPK 543
>SB_22517| Best HMM Match : UPF0081 (HMM E-Value=1)
Length = 2568
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +1
Query: 58 IMASAILKLLKSESQLVLRRSYSSSAPTTKLYIDGQYVDSKTTNWIELTNPATNEVIGRV 237
+M LKL + + + SY++ + + +DGQ T +EL NPA ++
Sbjct: 1450 VMDMPALKLAYMDGRDTIPESYTTVSSSDSNGVDGQGGSLTTELAVELINPAACCLV-TD 1508
Query: 238 PEATQDEL 261
P TQ+E+
Sbjct: 1509 PVPTQEEI 1516
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,819,148
Number of Sequences: 59808
Number of extensions: 383443
Number of successful extensions: 1049
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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