Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10o01f
         (617 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93389-1|CAB07668.1|  346|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z70686-10|CAD21656.1|  533|Caenorhabditis elegans Hypothetical p...    28   4.6  
Z70683-8|CAD21626.1|  533|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z92838-2|CAB07408.1|  211|Caenorhabditis elegans Hypothetical pr...    28   6.1  
U58086-1|AAC47123.1|  803|Caenorhabditis elegans CUL-4 protein.        28   6.1  
U29536-1|AAA68791.3|  840|Caenorhabditis elegans Cullin protein ...    28   6.1  
AL117199-4|CAN99722.1| 1342|Caenorhabditis elegans Hypothetical ...    27   8.1  
AL117195-32|CAB60770.3| 1342|Caenorhabditis elegans Hypothetical...    27   8.1  

>Z93389-1|CAB07668.1|  346|Caenorhabditis elegans Hypothetical
           protein T13F3.1 protein.
          Length = 346

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = -1

Query: 545 FNFHVDKILRIS-FVWSR*NEAGGVRALDNSYVVGV*EHSLVHVDSGVACCFVETFKIFG 369
           ++  +D I+ I+ FVW R NE  GV+ L+    +G+    LV + S     +  T   + 
Sbjct: 171 YDLKIDDIVYIAAFVWPR-NETTGVKYLNKRSAIGIGFDQLVVIISLTVIAYCGTCCYYK 229

Query: 368 IIEQL 354
           I +Q+
Sbjct: 230 IQQQM 234


>Z70686-10|CAD21656.1|  533|Caenorhabditis elegans Hypothetical
           protein F13B12.6 protein.
          Length = 533

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
 Frame = -1

Query: 380 KIFGIIEQLEQRDGFFPHFFV-KDRE-FQILGKESDLVHHHEIF--VGFH 243
           +I+G       RDG F HF V K +E +Q LG  ++ V H E+F  V +H
Sbjct: 424 RIWGYTVSYASRDGSFKHFLVEKIKEGYQFLG--TNQVVHDELFDLVAYH 471


>Z70683-8|CAD21626.1|  533|Caenorhabditis elegans Hypothetical
           protein F13B12.6 protein.
          Length = 533

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
 Frame = -1

Query: 380 KIFGIIEQLEQRDGFFPHFFV-KDRE-FQILGKESDLVHHHEIF--VGFH 243
           +I+G       RDG F HF V K +E +Q LG  ++ V H E+F  V +H
Sbjct: 424 RIWGYTVSYASRDGSFKHFLVEKIKEGYQFLG--TNQVVHDELFDLVAYH 471


>Z92838-2|CAB07408.1|  211|Caenorhabditis elegans Hypothetical
           protein T03D8.3 protein.
          Length = 211

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -1

Query: 254 VGFHVCVAVLAGLDVEVLGDFVVLSFIADLVNVVEK 147
           V F V VA + GLD+E  GDFV+ S   D ++++ +
Sbjct: 8   VFFTVGVAAIYGLDLENAGDFVLPS--GDFIDLISR 41


>U58086-1|AAC47123.1|  803|Caenorhabditis elegans CUL-4 protein.
          Length = 803

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +3

Query: 294 KNLEFSIFYEKMREEAIALFKLFYYAKDFECFYKTACYARVYMNQ 428
           KN+      ++M +EAI LF+       FE +YK     R+++ +
Sbjct: 455 KNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLER 499


>U29536-1|AAA68791.3|  840|Caenorhabditis elegans Cullin protein 4
           protein.
          Length = 840

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +3

Query: 294 KNLEFSIFYEKMREEAIALFKLFYYAKDFECFYKTACYARVYMNQ 428
           KN+      ++M +EAI LF+       FE +YK     R+++ +
Sbjct: 492 KNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLER 536


>AL117199-4|CAN99722.1| 1342|Caenorhabditis elegans Hypothetical
           protein Y57A10A.1 protein.
          Length = 1342

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = -1

Query: 560 VVHFIFNFHVDKILRISFVWSR*NEAGGVRALDNSYVVGV*EHSLV 423
           ++H + N+ ++  +RI FV     EAG ++ L  + VV V E+ ++
Sbjct: 743 IIHRLDNYSIETRVRIMFVMGVPVEAGFLKNLRKTAVVRVDENQMI 788


>AL117195-32|CAB60770.3| 1342|Caenorhabditis elegans Hypothetical
           protein Y57A10A.1 protein.
          Length = 1342

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = -1

Query: 560 VVHFIFNFHVDKILRISFVWSR*NEAGGVRALDNSYVVGV*EHSLV 423
           ++H + N+ ++  +RI FV     EAG ++ L  + VV V E+ ++
Sbjct: 743 IIHRLDNYSIETRVRIMFVMGVPVEAGFLKNLRKTAVVRVDENQMI 788


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,275,366
Number of Sequences: 27780
Number of extensions: 267964
Number of successful extensions: 816
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)