Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10n24r
         (771 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0027 - 40578075-40578437,40578647-40578767,40578852-405789...    29   5.4  
07_03_1651 - 28395369-28395436,28395524-28395575,28395857-283960...    28   9.5  
04_04_0853 + 28745953-28747635                                         28   9.5  

>01_07_0027 -
           40578075-40578437,40578647-40578767,40578852-40578952,
           40579176-40579451,40579485-40579805,40581609-40581623,
           40581969-40582295,40583287-40583538
          Length = 591

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +2

Query: 413 FNNTHIMEVILLNSPAVKLHKMFKRRKKVSHINWSFMKTP*SAF 544
           F   H +E+ LL     +LHK+FK     S   W  MK P ++F
Sbjct: 311 FRELHDLEMKLLVIQVEQLHKIFKLCGSPSDDYWEKMKFPHASF 354


>07_03_1651 -
           28395369-28395436,28395524-28395575,28395857-28396092,
           28396362-28396419,28396509-28396577,28396686-28396791,
           28397104-28397171,28397266-28397385,28398144-28398231,
           28399433-28399534,28399699-28399757,28399866-28400003,
           28400222-28400473,28400508-28400593,28401061-28401165,
           28402351-28402516
          Length = 590

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 530 P*SAFIIRKTKKQPKIGHITLNNKRH 607
           P  A  +R + KQP+  HI L+ KRH
Sbjct: 320 PREAAAVRSSPKQPQGDHIELHQKRH 345


>04_04_0853 + 28745953-28747635
          Length = 560

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 226 LNLFIVEMMSICLSIYNYEILCCLCISCLNP 134
           ++L +   +S+CL  + YEI+  LC   LNP
Sbjct: 308 ISLALPSCVSVCLEWWWYEIMILLCGLLLNP 338


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,908,927
Number of Sequences: 37544
Number of extensions: 252426
Number of successful extensions: 482
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)