Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10n24r
         (771 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92782-3|CAB07189.2|  326|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z70683-2|CAA94592.2|  717|Caenorhabditis elegans Hypothetical pr...    29   4.8  

>Z92782-3|CAB07189.2|  326|Caenorhabditis elegans Hypothetical
           protein F14F8.4 protein.
          Length = 326

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -2

Query: 254 VNYLKFIYLIKLIYSRNDVHLFVYL*L*NIVLPVYIMFESTIVFF 120
           +N LK+++    +YS+N +H +V      IVL   + F   +V F
Sbjct: 127 LNSLKYLFPFNSVYSQNSIHKYVRHFSVAIVLKDVLFFSPLLVHF 171


>Z70683-2|CAA94592.2|  717|Caenorhabditis elegans Hypothetical
           protein F13B12.3 protein.
          Length = 717

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 398 LTVILFNNTHIMEVILLNSPAVKLHKMFKRRKKVSHINWSF 520
           + V LF    +  V+L+N     L K ++   KVSHI W +
Sbjct: 534 IPVFLFCYMLVSSVLLVNLVTALLSKKYEDIDKVSHIYWKY 574


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,771,922
Number of Sequences: 27780
Number of extensions: 286853
Number of successful extensions: 669
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)