Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10n24r
         (771 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    25   1.0  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   3.1  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   3.1  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   3.1  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   4.2  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   5.5  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   7.3  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   9.6  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 198 PFVCLFIIMKYCVACV 151
           PF C+ I+  YC  C+
Sbjct: 287 PFFCVNIVTSYCKTCI 302


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +2

Query: 551 RKTKKQPKIGHITLNNKRHY*QMSHSNINGNTTKEDFNK 667
           R+  ++PKI     NN  H     ++  N N    ++NK
Sbjct: 72  RERSREPKIISSLSNNTIHNNNYKYNYNNNNYNNNNYNK 110


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +2

Query: 551 RKTKKQPKIGHITLNNKRHY*QMSHSNINGNTTKEDFNK 667
           R+  ++PKI     NN  H     ++  N N    ++NK
Sbjct: 72  RERSREPKIISSLSNNTIHNNNYKYNYNNNNYNNNNYNK 110


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = -3

Query: 667 FIKVFLGGIAVDI*M*HLSIMT----FII*SDVSDFRLFFCFS 551
           F+ V   G+ V I +   S+ T    F+I   +SDF + FC S
Sbjct: 30  FVSVMGNGMVVYIFLSTKSLRTPSNLFVINLAISDFLMMFCMS 72


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 551 RKTKKQPKIGHITLNNKRHY*QMSHSNINGNTTKEDFNK 667
           R+  K+PKI     NN ++    +++N N N    ++NK
Sbjct: 306 RERSKEPKIISSLSNNYKYSNYNNYNNYN-NNNYNNYNK 343


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 548 IRKTKKQPKIGHITLNNKRHY*QMSHSNINGNTTK 652
           I++T +   I   T+ +KR+    +H  I+ NTTK
Sbjct: 178 IKRTYEPGMICGATIISKRYVLTAAHCIIDENTTK 212


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = -3

Query: 208 EMMSICLSIYNYEILCCLCISCLNPLL 128
           + + +C S   +   CCLC+  +N ++
Sbjct: 341 QFLQVCRS-RRHSDSCCLCLDSMNAVI 366


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 290 FMKLILKNLMIFYEISL 340
           F  + + NLM+FYE SL
Sbjct: 298 FNGIQMPNLMVFYEKSL 314


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,601
Number of Sequences: 438
Number of extensions: 3324
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)