Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10n24r
         (771 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09570.1 68416.m01137 expressed protein                             31   1.1  
At5g18520.1 68418.m02187 expressed protein                             30   1.5  
At4g09160.1 68417.m01517 SEC14 cytosolic factor family protein /...    30   1.9  
At4g23030.1 68417.m03321 MATE efflux protein-related contains Pf...    28   5.9  
At3g26090.1 68416.m03249 expressed protein                             28   5.9  

>At3g09570.1 68416.m01137 expressed protein
          Length = 439

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -1

Query: 588 VMCPILGCFFVFLIIKAD*GVFIKDQLMWETFFLLLNILC 469
           V+ P+     +  I+  + G FIKD + W   FLL++I+C
Sbjct: 283 VVVPLQVLANIASIVIGETGPFIKDWVTWNQIFLLVDIVC 322


>At5g18520.1 68418.m02187 expressed protein
          Length = 440

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 549 IIKAD*GVFIKDQLMWETFFLLLNILC 469
           I+  + G FIKD + W   FLL++I+C
Sbjct: 297 IVIGETGPFIKDWVTWNQVFLLVDIIC 323


>At4g09160.1 68417.m01517 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein similar to
           polyphosphoinositide binding protein Ssh1p (GI:2739044)
           {Glycine max}; similar to polyphosphoinositide binding
           protein Ssh2, Glycine max, gb:T05953; contains Pfam
           PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
           CRAL/TRIO, N-terminus
          Length = 668

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 734 QLRKKFTLHI*DDDDKFIISQPIY*SLPWWYCR*Y 630
           +L  K  LH+  D+    +S+ I+ ++PWWY   Y
Sbjct: 470 RLATKQALHLLQDNYPEFVSKQIFINVPWWYLAFY 504


>At4g23030.1 68417.m03321 MATE efflux protein-related contains Pfam
           profile PF01554: Uncharacterized membrane protein family
          Length = 502

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 226 LNLFIVEMMSICLSIYNYEILCCLCISCLNP 134
           + L I   +S+CL  + YEI+  LC   LNP
Sbjct: 259 MKLAIPSCVSVCLEWWWYEIMILLCGLLLNP 289


>At3g26090.1 68416.m03249 expressed protein
          Length = 459

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/42 (26%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
 Frame = +1

Query: 37  CFFLLITKSLMLLIFTNAPRIYANNFYMK--KTIVDSNMIYT 156
           CFF+L+++S++  +   APR  +++F++   + I   N++++
Sbjct: 24  CFFVLLSRSVLPCLIHKAPRTNSSSFWIPVIQVISSFNLLFS 65


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,300,901
Number of Sequences: 28952
Number of extensions: 242066
Number of successful extensions: 458
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)