Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10n24f
(506 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ... 104 7e-24
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd... 98 6e-22
SPBC1711.04 |||methylenetetrahydrofolate reductase |Schizosaccha... 42 5e-05
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 33 0.019
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 28 0.92
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 28 0.92
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar... 27 1.2
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 2.8
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos... 26 3.7
SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase Ade2|Sc... 25 4.9
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 4.9
SPBC29A3.16 |||ribosome biogenesis protein Rrs1 |Schizosaccharom... 25 4.9
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 25 4.9
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 25 6.5
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S... 25 6.5
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe... 25 8.6
>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 937
Score = 104 bits (250), Expect = 7e-24
Identities = 56/131 (42%), Positives = 84/131 (64%), Gaps = 1/131 (0%)
Frame = +2
Query: 68 MARILDGKALAMEIKKELKQKIAQWVSLGNRAP-TIRCIIVGDDPASHTYVRNKVEAAKF 244
MA +L+G +LA ++++EL+++I+ S+ +++ I VG S+ YVR K AA
Sbjct: 1 MALLLEGTSLARKVREELREQISSIKSVDPYFNVSLKIIQVGGREDSNVYVRMKTRAANE 60
Query: 245 VGIDALTINRDSDITEEQLLSEIQNLNEDNSVDGILVQLPVPDTINERRVCDAIAPEKDI 424
GI +N DITE LL I+ NED +V GI+VQLP+P INE+ + +A+APEKD+
Sbjct: 61 AGISCEHVNFPEDITEYDLLLAIKGFNEDPTVHGIIVQLPLPAHINEQIITEAVAPEKDV 120
Query: 425 DGFHIINIGRL 457
DGF N+G+L
Sbjct: 121 DGFCETNLGKL 131
>SPBC2G2.08 |ade9||C-1-
tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 969
Score = 98.3 bits (234), Expect = 6e-22
Identities = 56/138 (40%), Positives = 83/138 (60%), Gaps = 1/138 (0%)
Frame = +2
Query: 47 SLGSASIMARILDGKALAMEIKKELKQKI-AQWVSLGNRAPTIRCIIVGDDPASHTYVRN 223
S G++S A IL+GK LA ++++ + +++ A N P + + VG S+ YVR
Sbjct: 26 SYGTSS-SANILNGKLLARKLQRSVAEEVQALKAKDRNFKPALAIVQVGKREDSNVYVRM 84
Query: 224 KVEAAKFVGIDALTINRDSDITEEQLLSEIQNLNEDNSVDGILVQLPVPDTINERRVCDA 403
K +AA+ VGID I LL E++ LN+D++V G+LVQLP+P +NER V ++
Sbjct: 85 KEKAARLVGIDFKYCPFPETIQMPALLHELKKLNDDHTVHGVLVQLPLPKHLNERTVTES 144
Query: 404 IAPEKDIDGFHIINIGRL 457
I P KD+DGF NIG L
Sbjct: 145 ITPPKDVDGFGAFNIGLL 162
>SPBC1711.04 |||methylenetetrahydrofolate reductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 320
Score = 41.9 bits (94), Expect = 5e-05
Identities = 33/145 (22%), Positives = 67/145 (46%), Gaps = 9/145 (6%)
Frame = +2
Query: 98 AMEIKKELKQKIAQWVSLGNRAPTIRCIIVGDDPASHTYVRNKVEAAKFVGIDALTINRD 277
A + + +++ Q V+L AP + + DPA+ Y + +G
Sbjct: 18 ASRVAETFVEQLKQHVNLFEFAPKLVGFLSNSDPAARMYADWTNKTCTEIGFQYEL---- 73
Query: 278 SDITEEQLLSEIQNLNEDNSVDGILVQLPVPDTINERRVCDAIAPEKDIDGF---HIINI 448
++ ++ L I N D SV+GI++ PV + ++ + ++P+KD++G +++N+
Sbjct: 74 REVPKDDLEDAIVEANNDPSVNGIMIYFPVFNDGQDQYLQQVVSPDKDVEGLCHKYVMNM 133
Query: 449 GRLCVDL------PTIVPATALAVV 505
L +I+P T LA+V
Sbjct: 134 YHNIRHLDPEKTKKSILPCTPLAIV 158
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 33.5 bits (73), Expect = 0.019
Identities = 14/47 (29%), Positives = 28/47 (59%)
Frame = +2
Query: 290 EEQLLSEIQNLNEDNSVDGILVQLPVPDTINERRVCDAIAPEKDIDG 430
EEQ+ ++ + +D+S++ +L+ L + D + R C IA E ++ G
Sbjct: 1438 EEQIDDDVSPVAQDSSLEELLISLDIIDLTSVMRSCQTIASEIELTG 1484
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 27.9 bits (59), Expect = 0.92
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 257 ALTINRDSDITEEQLLSEIQNLNEDNS 337
AL + RD+DI LS+ N+N DNS
Sbjct: 468 ALNLPRDTDIKATPNLSQSGNINSDNS 494
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 27.9 bits (59), Expect = 0.92
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = +2
Query: 50 LGSASIMARILDGKALAMEIKKELKQKIAQWVSLGNRAPTIRCIIVGDDPASHTYVRN 223
LG +I ILDGK+ K+EL + QW S+ R T R +++ +YV +
Sbjct: 346 LGKDAITPFILDGKS----SKQELIMALQQWASVHGRQVT-RPVLIASYETLRSYVEH 398
>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
Nup107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 794
Score = 27.5 bits (58), Expect = 1.2
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +2
Query: 329 DNSVDGILVQLPVPDTINE--RRVCDAIAPEKDIDGFHIINIGRLCVDLPTIV 481
DN +D +L + E RR C A+ K ID + G LC DL +++
Sbjct: 272 DNLIDDVLQSETSGNKRKELLRRSCLALTKNKRIDSYERALYGALCGDLNSVL 324
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.2 bits (55), Expect = 2.8
Identities = 14/62 (22%), Positives = 26/62 (41%)
Frame = +2
Query: 176 CIIVGDDPASHTYVRNKVEAAKFVGIDALTINRDSDITEEQLLSEIQNLNEDNSVDGILV 355
CI+VGD T + + A I + +N D+D + L+ E + ++ +
Sbjct: 1872 CILVGDTATGKTCILRLLAAIAGAKIKEMAVNSDTDTMD--LIGEYEQIDISRKASELFT 1929
Query: 356 QL 361
L
Sbjct: 1930 DL 1931
>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 25.8 bits (54), Expect = 3.7
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 224 KVEAAKFVGIDALTINRDS-DITEEQLLSEIQNLNEDNSVDG 346
K+ +A F + ++ +N I+ L +Q+LN D S+DG
Sbjct: 121 KITSAFFSLLQSVLLNHGQRSISPRNFLEIVQSLNRDFSIDG 162
>SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase
Ade2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 25.4 bits (53), Expect = 4.9
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = -2
Query: 478 NGR*IHTQPSDVDYVETIDIFFRSNSIANSPLINCIRYR*LDENSINTIIFI 323
NG+ I T P+D+D +E +I + + P + + EN+ I FI
Sbjct: 359 NGKRIETFPADLDSLEEAEIVYETFPGWKVPTTGITHWDQMPENAKKYIEFI 410
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.4 bits (53), Expect = 4.9
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = -2
Query: 466 IHTQPSDVDYVETIDIFFRSNSIANSP 386
IHTQ S++ Y+ ++D+ + +++ P
Sbjct: 2206 IHTQSSELPYLSSVDVTTHAKILSSHP 2232
>SPBC29A3.16 |||ribosome biogenesis protein Rrs1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 25.4 bits (53), Expect = 4.9
Identities = 9/24 (37%), Positives = 20/24 (83%)
Frame = +2
Query: 293 EQLLSEIQNLNEDNSVDGILVQLP 364
+QL++++ +L ++ + DG+L+QLP
Sbjct: 49 QQLVNKMISLPKERTSDGVLLQLP 72
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 25.4 bits (53), Expect = 4.9
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +2
Query: 278 SDITEEQLLSEIQNLNEDNSVD 343
S +T E LLSE+++ N +NSV+
Sbjct: 747 SRLTSEALLSELKSRNGNNSVE 768
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 25.0 bits (52), Expect = 6.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 164 PTIRCIIVGDDPASHTYVRNKVEAAKF 244
PTI+C++VGD T + KF
Sbjct: 2 PTIKCVVVGDGAVGKTCLLISYTTNKF 28
>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
Paa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 25.0 bits (52), Expect = 6.5
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +2
Query: 164 PTIRCIIVGDDPASHTYVRNKVEAAKFVGIDALTINRDSDITEEQLLSEIQNLNEDNSVD 343
PT+ ++ +DP + +R V A V L DS + E+Q++ ++ L +DN D
Sbjct: 521 PTLEQLV--NDPIPN--IRFNVAKAFEVLKPVLAAGGDSTVYEQQIIPLLEQLTKDNDPD 576
>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 329
Score = 24.6 bits (51), Expect = 8.6
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -3
Query: 366 TGNWTRIPSTLLSSFKF 316
T NW + P LLSSF F
Sbjct: 125 TSNWGQFPLLLLSSFVF 141
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,244,605
Number of Sequences: 5004
Number of extensions: 47086
Number of successful extensions: 172
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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