Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10n24f
(506 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0365 + 2865496-2865588,2865673-2865856,2866791-2866948,286... 119 2e-27
02_01_0156 - 1086750-1086920,1087680-1087847,1087935-1088171,108... 118 2e-27
09_02_0466 + 9599389-9599662,9600324-9600643,9600950-9601186,960... 111 2e-25
04_04_0501 - 25681880-25683721,25683809-25684075,25685347-25685964 32 0.23
12_01_0601 - 4907397-4907685,4908592-4909100 30 0.93
01_06_1692 - 39232475-39232867,39233176-39233310,39233770-392339... 29 1.6
12_01_0747 - 6724513-6724801,6725708-6726174 28 5.0
03_02_0055 - 5295466-5295476,5295519-5296635,5296760-5296855,529... 28 5.0
04_03_0658 + 18447986-18448117,18448204-18448317,18448388-184485... 27 6.5
02_01_0017 - 112766-113650 27 8.7
01_06_0641 - 30782235-30782423,30782498-30782605,30782848-307829... 27 8.7
>05_01_0365 +
2865496-2865588,2865673-2865856,2866791-2866948,
2867035-2867247,2867330-2867560
Length = 292
Score = 119 bits (286), Expect = 2e-27
Identities = 61/143 (42%), Positives = 92/143 (64%), Gaps = 2/143 (1%)
Frame = +2
Query: 68 MARILDGKALAMEIKKELKQKIAQWVSLGNRAPTIRCIIVGDDPASHTYVRNKVEAAKFV 247
MA+I+DGKA+A +I++E+ +A S N P + +IVG S TYV+ K +A V
Sbjct: 1 MAQIIDGKAVAADIRREVAADVAALSSAHNLVPGLAVVIVGSRKDSQTYVQMKRKACAEV 60
Query: 248 GIDALTINRDSDITEEQLLSEIQNLNEDNSVDGILVQLPVPDTINERRVCDAIAPEKDID 427
GI ++ ++ DI+E L++E+ LN D +V GILVQLP+P INE ++ + I+ EKD+D
Sbjct: 61 GIRSVDVDLAEDISEAALVAEVHRLNADPAVHGILVQLPLPKHINEEKILNEISLEKDVD 120
Query: 428 GFHIINIGRLCVD--LPTIVPAT 490
GFH +NIG+L + P +P T
Sbjct: 121 GFHPLNIGKLAMKGRDPLFLPCT 143
>02_01_0156 -
1086750-1086920,1087680-1087847,1087935-1088171,
1088763-1089073,1089343-1089571
Length = 371
Score = 118 bits (285), Expect = 2e-27
Identities = 60/142 (42%), Positives = 89/142 (62%), Gaps = 2/142 (1%)
Frame = +2
Query: 71 ARILDGKALAMEIKKELKQKIAQWVSLGNRAPTIRCIIVGDDPASHTYVRNKVEAAKFVG 250
A+I+DGK +A +I++E+ +IA+ P + I+VG S TYVRNK +A + VG
Sbjct: 80 AKIIDGKLVAKQIREEIAVEIAKMKDAIGVVPGLAVILVGSRKDSQTYVRNKKKACEAVG 139
Query: 251 IDALTINRDSDITEEQLLSEIQNLNEDNSVDGILVQLPVPDTINERRVCDAIAPEKDIDG 430
I + +N D +E+++L I N D SV GILVQLP+P +N+ + +A++ EKD+DG
Sbjct: 140 IKSYEVNLPEDSSEDEVLKHIATFNSDPSVHGILVQLPLPHHMNDENILNAVSIEKDVDG 199
Query: 431 FHIINIGRLCVD--LPTIVPAT 490
FH +NIGRL + P VP T
Sbjct: 200 FHPLNIGRLAMQGRDPFFVPCT 221
>09_02_0466 +
9599389-9599662,9600324-9600643,9600950-9601186,
9601278-9601445,9601778-9601966
Length = 395
Score = 111 bits (268), Expect = 2e-25
Identities = 55/145 (37%), Positives = 88/145 (60%), Gaps = 2/145 (1%)
Frame = +2
Query: 71 ARILDGKALAMEIKKELKQKIAQWVSLGNRAPTIRCIIVGDDPASHTYVRNKVEAAKFVG 250
A I+DGK++A +I+ ++ +++ Q + P + ++VGD S +YVR K++ + VG
Sbjct: 98 ATIIDGKSVAEDIRFQIAEEVRQMKNAVGHVPGLAVVLVGDRRDSESYVRYKIKGCEEVG 157
Query: 251 IDALTINRDSDITEEQLLSEIQNLNEDNSVDGILVQLPVPDTINERRVCDAIAPEKDIDG 430
I +L + TE+ ++ + NED SV GILVQLP+P ++E R+ AI+ EKD+DG
Sbjct: 158 IKSLLAELPGNCTEDVVVDSVSRFNEDPSVHGILVQLPLPQHMDEERILSAISLEKDVDG 217
Query: 431 FHIINIGRLCV--DLPTIVPATALA 499
FH +N+G L + P VP A A
Sbjct: 218 FHPLNVGNLALRSRKPLFVPCAAKA 242
>04_04_0501 - 25681880-25683721,25683809-25684075,25685347-25685964
Length = 908
Score = 32.3 bits (70), Expect = 0.23
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = -1
Query: 266 LLMHRCPQILRLQLCS*HRCGSLGHRQQL--YSEWW-ALGFQDSPTVLFFAS 120
L + CP + R+ LCS H CG L +Q+ S+WW L ++D V S
Sbjct: 854 LRVEDCPNLRRIPLCSTHNCGKL---KQICGSSDWWKKLLWEDKEAVAHMES 902
>12_01_0601 - 4907397-4907685,4908592-4909100
Length = 265
Score = 30.3 bits (65), Expect = 0.93
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Frame = +2
Query: 152 GNRAPTIRCIIVGDDPASHTYVRNKVEAAKFVGIDALTINRDSDITEEQLLSEIQNLNED 331
G R T R ++V D + HT + K + K +GI+ + +EE E+++ ++D
Sbjct: 163 GMRRLTQRTMLVDD--SDHTALFEKKASVKQIGIEEMRGKAKDVSSEEGNSEEVKSSDDD 220
Query: 332 -NSVDGILVQLPVPDTINERRVCDAIAPEKDIDGF 433
+ V G Q P D+ E + D A EK + F
Sbjct: 221 EDMVIGGYTQDPYDDSGLEDLLQDQDALEKSVKKF 255
>01_06_1692 -
39232475-39232867,39233176-39233310,39233770-39233916,
39234131-39234303,39235201-39235288,39235508-39235725,
39235968-39236025,39236259-39236315,39237022-39237099
Length = 448
Score = 29.5 bits (63), Expect = 1.6
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +1
Query: 436 HNQHRKAVCGSTYHCAGYS 492
H +++ +CGST+HC +S
Sbjct: 44 HTSYKQGICGSTFHCRYFS 62
>12_01_0747 - 6724513-6724801,6725708-6726174
Length = 251
Score = 27.9 bits (59), Expect = 5.0
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Frame = +2
Query: 152 GNRAPTIRCIIVGDDPASHTYVRNKVEAAKFVGIDALTINRDSDITEEQLLSE---IQNL 322
G R T R ++V D + HT + K + K +GI+ + + D++ E+ SE +
Sbjct: 149 GMRRLTQRTMLVDD--SDHTALFEKKASVKQIGIEEMR-GKAKDVSSEEGNSEEVKSSDY 205
Query: 323 NEDNSVDGILVQLPVPDTINERRVCDAIAPEKDIDGF 433
+ED + G Q P D+ E + D A EK + F
Sbjct: 206 DEDMVIRG-YAQNPYDDSGLEDLLQDQDALEKSVKKF 241
>03_02_0055 -
5295466-5295476,5295519-5296635,5296760-5296855,
5297097-5297263,5297345-5297519,5297521-5297699,
5298004-5298109
Length = 616
Score = 27.9 bits (59), Expect = 5.0
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +2
Query: 50 LGSASIMARILDGKALAMEIKKELKQKIAQWVSLGNRAPTIRCIIVGDDPASHT 211
L S A + G AL +++KK+ ++ W+ L IR ++V D +T
Sbjct: 125 LSENSKSAAPVKGSALKVDLKKDHHYALSVWLQLSKGEGDIRAVLVTPDGKFNT 178
>04_03_0658 +
18447986-18448117,18448204-18448317,18448388-18448507,
18448589-18449215,18449289-18449462,18449545-18449809,
18449889-18449959,18450043-18450145,18450221-18450280,
18450533-18450744,18450830-18450901,18451446-18451502,
18451598-18451882,18452359-18452371,18452396-18452463,
18452649-18452747,18452836-18452967,18453038-18453141,
18453234-18453423,18453519-18453524
Length = 967
Score = 27.5 bits (58), Expect = 6.5
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Frame = +3
Query: 327 KIIVLMEFSSNYLYLI------QLMR--GEFAMLLLLKKISMVST*STSEGCVWIYLPLC 482
K+++LMEF++N L+ LM+ + ++ K S S E C ++ P+
Sbjct: 771 KLLILMEFTANSHLLVLHSNKNDLMKHPSKTNFGMVQKSFSGASLARPIETCDMLFFPIL 830
Query: 483 RLQHW 497
L+HW
Sbjct: 831 HLRHW 835
>02_01_0017 - 112766-113650
Length = 294
Score = 27.1 bits (57), Expect = 8.7
Identities = 19/65 (29%), Positives = 27/65 (41%)
Frame = +2
Query: 305 SEIQNLNEDNSVDGILVQLPVPDTINERRVCDAIAPEKDIDGFHIINIGRLCVDLPTIVP 484
+E+ L E+ + +L LP CD + + F +LC LPT VP
Sbjct: 204 AEVARLEEEGKLAALLEGLPRARPGGG--CCDGCGGMRFLPCFDCNGSRKLCFSLPTPVP 261
Query: 485 ATALA 499
A A A
Sbjct: 262 AAAAA 266
>01_06_0641 -
30782235-30782423,30782498-30782605,30782848-30782959,
30783429-30783526,30784249-30784336,30784780-30784875,
30785101-30785171,30786003-30786075,30787023-30787324,
30787418-30787503,30788024-30788084,30789386-30789688
Length = 528
Score = 27.1 bits (57), Expect = 8.7
Identities = 14/54 (25%), Positives = 30/54 (55%)
Frame = +2
Query: 194 DPASHTYVRNKVEAAKFVGIDALTINRDSDITEEQLLSEIQNLNEDNSVDGILV 355
DP + +R+++ A F ++ ++ +S +E S+ Q+ +ED DG++V
Sbjct: 473 DPKETSGLRDRIRALMFDAFESARMDDESSQSESH--SDDQSGDEDKDRDGVMV 524
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,767,957
Number of Sequences: 37544
Number of extensions: 309965
Number of successful extensions: 807
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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