Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10n24f
         (506 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21968| Best HMM Match : THF_DHG_CYH (HMM E-Value=0.0018)            56   1e-08
SB_57521| Best HMM Match : rve (HMM E-Value=0.13)                      33   0.18 
SB_19298| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.55 
SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.7  
SB_36421| Best HMM Match : DUF433 (HMM E-Value=1.1)                    29   2.2  
SB_29153| Best HMM Match : DUF433 (HMM E-Value=1.1)                    29   2.2  
SB_29494| Best HMM Match : Mpp10 (HMM E-Value=0.62)                    29   2.9  
SB_25340| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_9853| Best HMM Match : Lipase_3 (HMM E-Value=0.00075)               28   5.1  
SB_5057| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.7  
SB_37366| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.82)           27   8.9  
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_1210| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.9  

>SB_21968| Best HMM Match : THF_DHG_CYH (HMM E-Value=0.0018)
          Length = 101

 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 33/74 (44%), Positives = 49/74 (66%), Gaps = 5/74 (6%)
 Frame = +2

Query: 284 ITEEQLLSEIQNLNEDNSVDGILVQLPVPDTIN--ERRVC-DAIAPEKDIDGFHIINIGR 454
           + + Q+L  +  LN+D+++ GI+VQLP PD+ N  +  +C +A+ PEKD+DG H  N GR
Sbjct: 17  LCDMQVLKAVDELNKDSAIHGIIVQLP-PDSENPIDPGICTNAVIPEKDVDGLHDENAGR 75

Query: 455 LC-VDLPT-IVPAT 490
           L   +L T IVP T
Sbjct: 76  LARGELATCIVPCT 89


>SB_57521| Best HMM Match : rve (HMM E-Value=0.13)
          Length = 1105

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = +2

Query: 197  PASHTYVRNKVEAAKFVGIDALTINRDSDITEEQLLS-EIQNLNEDNSVDGILVQLPVP 370
            PAS  Y+ N  + ++  GI   T      I + Q+ S + + +N+ N +DG+ V++P+P
Sbjct: 1017 PASEPYIANPAQFSQPTGITHNT----PQIHKSQVSSHQAEEINKSNPMDGLAVEIPLP 1071


>SB_19298| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 219

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = +2

Query: 197 PASHTYVRNKVEAAKFVGIDALTINRDSDITEEQLLS-EIQNLNEDNSVDGILVQLPVP 370
           PAS  Y+ N  + ++  GI     +    I + Q+ S + + +N+ N +DG+ +++P+P
Sbjct: 131 PASEPYIANPAQFSQPTGIT----HNAPQIHKSQVSSHQDEEINKSNPMDGLAIEIPLP 185


>SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2520

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
 Frame = +2

Query: 251 IDALTINRDSDIT--EEQLLSEIQNLNED 331
           IDAL  N+D D+T  +E+L SE+Q   E+
Sbjct: 663 IDALKQNKDKDVTALKEELTSEVQKYKEE 691


>SB_36421| Best HMM Match : DUF433 (HMM E-Value=1.1)
          Length = 444

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 20/92 (21%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
 Frame = +2

Query: 2   SSHLTSKMRSHTYIDSLGSASIMARILDGKALAMEIK-KELKQKIAQWVS--LGNRAPTI 172
           S+ LT+   + + I S  S S +  +       ++IK  ++ QK+   +   LG     I
Sbjct: 195 STSLTNSSLTSSSISS-SSPSPLKNLTTAHTDFLQIKLPDIAQKLTSLIDCKLGKSPSNI 253

Query: 173 RCIIVGDDPASHTYVRNKVEAAKFVGIDALTI 268
            C+++  +P     +++ V A +FV + ++ +
Sbjct: 254 ICVVLQVNPIREIQMKSGVNAGRFVALSSIVV 285


>SB_29153| Best HMM Match : DUF433 (HMM E-Value=1.1)
          Length = 680

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 20/92 (21%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
 Frame = +2

Query: 2   SSHLTSKMRSHTYIDSLGSASIMARILDGKALAMEIK-KELKQKIAQWVS--LGNRAPTI 172
           S+ LT+   + + I S  S S +  +       ++IK  ++ QK+   +   LG     I
Sbjct: 195 STSLTNSSLTSSSISS-SSPSPLKNLTTAHTDFLQIKLPDIAQKLTSLIDCKLGKSPSNI 253

Query: 173 RCIIVGDDPASHTYVRNKVEAAKFVGIDALTI 268
            C+++  +P     +++ V A +FV + ++ +
Sbjct: 254 ICVVLQVNPIREIQMKSGVNAGRFVALSSIVV 285


>SB_29494| Best HMM Match : Mpp10 (HMM E-Value=0.62)
          Length = 631

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 70  GAYPRWQSTCYGDKEGAEAKNSTVGES 150
           G + +   TC G KEG+ +K ST  +S
Sbjct: 323 GVFKKMPKTCVGKKEGSLSKTSTASDS 349


>SB_25340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1105

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +2

Query: 80   LDGKALAMEIKKELKQKIAQWVSLGNRAPTIRCIIVGDDPA 202
            +DGK   +  + +L   I + ++  N +P+  CI+ GD P+
Sbjct: 994  IDGKLFVVNEEDQLMASITKQIAASN-SPSYTCILTGDAPS 1033


>SB_9853| Best HMM Match : Lipase_3 (HMM E-Value=0.00075)
          Length = 593

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -3

Query: 441 IMWKPSISFSGAIASQTLLSLIVSGTGNWTRIPST 337
           +++K S+ FS A     +L +IVSG    T++PST
Sbjct: 128 VLFKNSLRFSIARLITVVLVVIVSGVWAGTKVPST 162


>SB_5057| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 341

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +2

Query: 101 MEIKKELKQKIAQWVSLGNRAPTIRCI 181
           + ++++LK+KI +W S+   A  +R I
Sbjct: 184 LRVRRDLKEKILEWTSIREDAAILRAI 210


>SB_37366| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.82)
          Length = 705

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/68 (20%), Positives = 31/68 (45%)
 Frame = +2

Query: 152 GNRAPTIRCIIVGDDPASHTYVRNKVEAAKFVGIDALTINRDSDITEEQLLSEIQNLNED 331
           G   PT    I+G      ++  ++ +  +F  ++++ I+ D+D  E+  L+  Q  +  
Sbjct: 448 GEEGPTAMQSIIGLSTIWSSHQEDEFDLQQFWSLESMGISPDADPPEKNFLTNYQATSIT 507

Query: 332 NSVDGILV 355
              DG  +
Sbjct: 508 RDEDGTYI 515


>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6863

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 21/79 (26%), Positives = 39/79 (49%)
 Frame = +2

Query: 203  SHTYVRNKVEAAKFVGIDALTINRDSDITEEQLLSEIQNLNEDNSVDGILVQLPVPDTIN 382
            SHT + +++EA +  GI  L    + D    QLL EI  L ED+    ++  + + D  +
Sbjct: 4692 SHT-LTSEIEALELEGIPILEKLPEKD--RLQLLKEISLLKEDSRTVEVVAAVRLEDLKS 4748

Query: 383  ERRVCDAIAPEKDIDGFHI 439
               V +++  E ++   H+
Sbjct: 4749 WIAVLNSVQQEYELCSDHL 4767


>SB_1210| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 194

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 323 LNFGSQREVVLRLYHCPC*LLMHRC 249
           LN+ +  ++VLR++H  C  + HRC
Sbjct: 35  LNYAASEQIVLRVHHMRC-EIPHRC 58


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,988,305
Number of Sequences: 59808
Number of extensions: 363268
Number of successful extensions: 796
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)