Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10n24f
(506 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41552-3|AAC69100.2| 303|Caenorhabditis elegans Dauer or aging ... 78 3e-15
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr... 34 0.052
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr... 34 0.052
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein... 34 0.052
Z81074-7|CAB03042.1| 495|Caenorhabditis elegans Hypothetical pr... 29 1.9
AF106575-5|AAC78171.1| 421|Caenorhabditis elegans Hypothetical ... 29 1.9
U80454-5|AAB37877.1| 368|Caenorhabditis elegans Hypothetical pr... 29 2.6
AC006617-4|AAF39771.1| 291|Caenorhabditis elegans Hypothetical ... 28 4.5
L15201-1|AAA27946.2| 273|Caenorhabditis elegans Hypothetical pr... 27 7.8
>U41552-3|AAC69100.2| 303|Caenorhabditis elegans Dauer or aging
adult overexpressionprotein 3 protein.
Length = 303
Score = 78.2 bits (184), Expect = 3e-15
Identities = 47/134 (35%), Positives = 72/134 (53%), Gaps = 3/134 (2%)
Frame = +2
Query: 65 IMARILDGKALAMEIKKELKQKIAQWVSLGNRAPTIRCII-VGDDPASHTYVRNKVEAAK 241
++A I+ G + ++ ++ QKIA+ + I+ VG+ S+ Y+ +K++ AK
Sbjct: 1 MVAEIVSGLEYSKKVLHDVGQKIAKTREHHPNFHAVLAIVQVGNRSDSNVYINSKLKKAK 60
Query: 242 FVGIDALTINRDSDITEEQLLSEIQNLNEDNSVDGILVQLPV--PDTINERRVCDAIAPE 415
+G D I IT+ L EI LN DN +DGI++QLP+ I+ V D I P
Sbjct: 61 EIGADGKLIKLPDTITQGDLKREIMALNHDNEIDGIIIQLPLDCKHEIDADSVIDLIDPL 120
Query: 416 KDIDGFHIINIGRL 457
KD+DG IN GRL
Sbjct: 121 KDVDGLTRINAGRL 134
>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 34.3 bits (75), Expect = 0.052
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +2
Query: 74 RILDGKALAMEIKKELKQKIAQWVSLGNRAPTIRCIIVGDDPASHTYVRNKV 229
R LD +A +KEL ++ + VSL +RA I C + G P H +K+
Sbjct: 1734 RNLDDVDIAKSTRKELAERDSHIVSLTSRATAIHCALPGKGPQLHDVTLDKL 1785
>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 34.3 bits (75), Expect = 0.052
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +2
Query: 74 RILDGKALAMEIKKELKQKIAQWVSLGNRAPTIRCIIVGDDPASHTYVRNKV 229
R LD +A +KEL ++ + VSL +RA I C + G P H +K+
Sbjct: 1734 RNLDDVDIAKSTRKELAERDSHIVSLTSRATAIHCALPGKGPQLHDVTLDKL 1785
>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
protein.
Length = 3674
Score = 34.3 bits (75), Expect = 0.052
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +2
Query: 74 RILDGKALAMEIKKELKQKIAQWVSLGNRAPTIRCIIVGDDPASHTYVRNKV 229
R LD +A +KEL ++ + VSL +RA I C + G P H +K+
Sbjct: 1734 RNLDDVDIAKSTRKELAERDSHIVSLTSRATAIHCALPGKGPQLHDVTLDKL 1785
>Z81074-7|CAB03042.1| 495|Caenorhabditis elegans Hypothetical
protein F32B6.8b protein.
Length = 495
Score = 29.1 bits (62), Expect = 1.9
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 207 WLAGSSPTIIQRMVGARFPRLTH 139
W AGS+P ++ + GAR+P L H
Sbjct: 4 WSAGSTPGSVKPVYGARYPPLHH 26
>AF106575-5|AAC78171.1| 421|Caenorhabditis elegans Hypothetical
protein K04F1.12 protein.
Length = 421
Score = 29.1 bits (62), Expect = 1.9
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +2
Query: 155 NRAPTIRCIIVGDDPASHTYVRNKVEAAKFVGIDALTINRDSDITEEQLLSEIQNL 322
+R PT CI G S + + + DAL I ++D+TE+QL S +NL
Sbjct: 71 SRCPT-GCIFDGSILYSDSIKNFPKKCSTVCAPDALYIGYETDLTEKQLTSTFKNL 125
>U80454-5|AAB37877.1| 368|Caenorhabditis elegans Hypothetical
protein T16A1.8 protein.
Length = 368
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +2
Query: 197 PASHTYVRNKVEAAKFVGIDALTINRDSDITEEQLLSEIQNLNEDNSVDGILVQL 361
P SHT VRN+VE K V + +++D T+ + + + + +V + + +
Sbjct: 301 PGSHTPVRNEVEIGK-VEVRTYIVSKDGIQTDPEKIKAVSKFPQPKNVMDVCLSI 354
>AC006617-4|AAF39771.1| 291|Caenorhabditis elegans Hypothetical
protein C39B5.7 protein.
Length = 291
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 341 DGILVQLPVPDTINERRVCDAIAPEKDIDGFHIINIG-RLCVD 466
D IL +LP D ++ R+VC ++ D G H+ I +C D
Sbjct: 7 DEILSKLPAMDLLSCRKVCKSLRSAVDQSGNHLNRISFDICND 49
>L15201-1|AAA27946.2| 273|Caenorhabditis elegans Hypothetical
protein C08C3.2 protein.
Length = 273
Score = 27.1 bits (57), Expect = 7.8
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Frame = +2
Query: 200 ASHTYVRNKVEAAKFVGIDALTIN-RDSDITEEQLLSEI---QNLNEDNSVDGILVQLPV 367
ASH+ N + KF D + ++ D T+ Q L E+ + +D ++DG+L+ +
Sbjct: 166 ASHSSYFNALFLGKFKEADQSEVTLQNIDPTDFQSLLEVLYGEPAIDDGTIDGVLLLAHM 225
Query: 368 PDTINERRVCDAIAPEKDI 424
D R C+ EK +
Sbjct: 226 LDVTLAIRKCEEFLIEKSM 244
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,501,204
Number of Sequences: 27780
Number of extensions: 268049
Number of successful extensions: 761
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -