Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10n24f
         (506 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    25   0.34 
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   1.8  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   1.8  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    22   4.2  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    21   7.3  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   7.3  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    21   9.7  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         21   9.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.7  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 25.4 bits (53), Expect = 0.34
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 281 DITEEQLLSEIQNLNEDNSVDGI 349
           D+T + LL  I+NL + +++DG+
Sbjct: 137 DMTRQYLLQLIRNLRQSSALDGV 159


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 188 QQLYSEWWALGFQDSPTV 135
           QQ  S W  LGF  +PT+
Sbjct: 334 QQWNSYWGILGFPSAPTI 351


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 188 QQLYSEWWALGFQDSPTV 135
           QQ  S W  LGF  +PT+
Sbjct: 334 QQWNSYWGILGFPSAPTI 351


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 404 IAPEKDIDGFHIINIGRLCVDLPTIVPA 487
           +A EKDIDGF ++    L  D   IV A
Sbjct: 219 LAKEKDIDGF-LVGGASLKPDFVQIVNA 245


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +2

Query: 140 WVSLGNRAPTIRCI 181
           W+S+  + P  RCI
Sbjct: 138 WISVQEQVPRFRCI 151


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 6/16 (37%), Positives = 8/16 (50%)
 Frame = +1

Query: 433 PHNQHRKAVCGSTYHC 480
           PH  H K    + +HC
Sbjct: 53  PHQDHNKEKSKNNHHC 68


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 398 RKLSSH*LYQVQVIGREFHQHYYL 327
           R+ +S+  YQ   + +EFH + YL
Sbjct: 10  RQRTSYTRYQTLELEKEFHFNRYL 33


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = +2

Query: 134 AQWVSLGNRAPTIRCI 181
           ++W+S+ + A  IRC+
Sbjct: 71  SKWLSINHSACAIRCL 86


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +1

Query: 64  HHGAYPRWQSTC 99
           HH  YP + S+C
Sbjct: 68  HHRLYPAFSSSC 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,260
Number of Sequences: 438
Number of extensions: 3110
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)