Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10n24f
         (506 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00620.1 68417.m00086 tetrahydrofolate dehydrogenase/cyclohyd...   114   3e-26
At2g38660.1 68415.m04748 tetrahydrofolate dehydrogenase/cyclohyd...   111   3e-25
At3g12290.1 68416.m01534 tetrahydrofolate dehydrogenase/cyclohyd...   109   1e-24
At4g00600.1 68417.m00084 tetrahydrofolate dehydrogenase/cyclohyd...    76   2e-14
At2g36010.3 68415.m04422 E2F transcription factor-3 (E2F3) ident...    27   5.5  
At3g11040.1 68416.m01332 glycosyl hydrolase family 85 protein co...    27   7.3  
At2g36010.2 68415.m04421 E2F transcription factor-3 (E2F3) ident...    27   7.3  
At4g00580.1 68417.m00081 COP1-interacting protein-related simila...    27   9.6  

>At4g00620.1 68417.m00086 tetrahydrofolate
           dehydrogenase/cyclohydrolase, putative similar to
           SP|P07245 C-1-tetrahydrofolate synthase, cytoplasmic
           (C1-THF synthase) [Includes: Methylenetetrahydrofolate
           dehydrogenase (EC 1.5.1.5); Methenyltetrahydrofolate
           cyclohydrolase (EC 3.5.4.9); Formyltetrahydrofolate
           synthetase (EC 6.3.4.3)] {Saccharomyces cerevisiae};
           contains Pfam profiles PF02882: Tetrahydrofolate
           dehydrogenase/cyclohydrolase, NAD(P)-binding domain,
           PF00763: Tetrahydrofolate dehydrogenase/cyclohydrolase,
           catalytic domain
          Length = 360

 Score =  114 bits (275), Expect = 3e-26
 Identities = 58/142 (40%), Positives = 89/142 (62%), Gaps = 2/142 (1%)
 Frame = +2

Query: 71  ARILDGKALAMEIKKELKQKIAQWVSLGNRAPTIRCIIVGDDPASHTYVRNKVEAAKFVG 250
           A ++DGKA+A +I+ E+  ++++        P +  I+VGD   S TYVRNK +A   VG
Sbjct: 69  AIVIDGKAVAKKIRDEITIEVSRMKESIGVIPGLAVILVGDRKDSATYVRNKKKACDSVG 128

Query: 251 IDALTINRDSDITEEQLLSEIQNLNEDNSVDGILVQLPVPDTINERRVCDAIAPEKDIDG 430
           I +  +    D +EE++L  +   N+D SV GILVQLP+P  ++E+ + +A++ EKD+DG
Sbjct: 129 IKSFEVRLAEDSSEEEVLKSVSGFNDDPSVHGILVQLPLPSHMDEQNILNAVSIEKDVDG 188

Query: 431 FHIINIGRLCV--DLPTIVPAT 490
           FH +NIGRL +    P  VP T
Sbjct: 189 FHPLNIGRLAMRGREPLFVPCT 210


>At2g38660.1 68415.m04748 tetrahydrofolate
           dehydrogenase/cyclohydrolase, putative similar to
           SP|P09440 C-1-tetrahydrofolate synthase, mitochondrial
           precursor (C1-THF synthase) [Includes:
           Methylenetetrahydrofolate dehydrogenase (EC 1.5.1.5);
           Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9);
           Formyltetrahydrofolate synthetase (EC 6.3.4.3)
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF02882: Tetrahydrofolate dehydrogenase/cyclohydrolase,
           NAD(P)-binding domain, PF00763: Tetrahydrofolate
           dehydrogenase/cyclohydrolase, catalytic domain
          Length = 352

 Score =  111 bits (266), Expect = 3e-25
 Identities = 47/129 (36%), Positives = 81/129 (62%)
 Frame = +2

Query: 77  ILDGKALAMEIKKELKQKIAQWVSLGNRAPTIRCIIVGDDPASHTYVRNKVEAAKFVGID 256
           ++DG  +A EI+ ++  ++ +      + P +  ++VG+   S TYVRNK++A +  GI 
Sbjct: 65  VIDGNVIAEEIRTKIISEVGKMKKAVGKVPGLAVVLVGEQRDSQTYVRNKIKACEETGIK 124

Query: 257 ALTINRDSDITEEQLLSEIQNLNEDNSVDGILVQLPVPDTINERRVCDAIAPEKDIDGFH 436
           ++      D TE Q++S ++  NED S+ GILVQLP+P  +NE ++ + +  EKD+DGFH
Sbjct: 125 SVLAELPEDCTEGQIISVLRKFNEDTSIHGILVQLPLPQHLNESKILNMVRLEKDVDGFH 184

Query: 437 IINIGRLCV 463
            +N+G L +
Sbjct: 185 PLNVGNLAM 193


>At3g12290.1 68416.m01534 tetrahydrofolate
           dehydrogenase/cyclohydrolase, putative similar to
           SP|P07245 C-1-tetrahydrofolate synthase, cytoplasmic
           (C1-THF synthase) [Includes: Methylenetetrahydrofolate
           dehydrogenase (EC 1.5.1.5); Methenyltetrahydrofolate
           cyclohydrolase (EC 3.5.4.9); Formyltetrahydrofolate
           synthetase (EC 6.3.4.3)] {Saccharomyces cerevisiae};
           contains Pfam profiles PF02882: Tetrahydrofolate
           dehydrogenase/cyclohydrolase, NAD(P)-binding domain,
           PF00763: Tetrahydrofolate dehydrogenase/cyclohydrolase,
           catalytic domain
          Length = 299

 Score =  109 bits (262), Expect = 1e-24
 Identities = 55/147 (37%), Positives = 86/147 (58%), Gaps = 2/147 (1%)
 Frame = +2

Query: 56  SASIMARILDGKALAMEIKKELKQKIAQWVSLGNRAPTIRCIIVGDDPASHTYVRNKVEA 235
           S+   A+I+DGKA+A  I+ E+ +++        + P +  +IVG    S TYV  K +A
Sbjct: 4   SSDHTAKIIDGKAIAHTIRSEIAEEVRGLSEKHGKVPGLAVVIVGSRKDSQTYVNTKRKA 63

Query: 236 AKFVGIDALTINRDSDITEEQLLSEIQNLNEDNSVDGILVQLPVPDTINERRVCDAIAPE 415
              VGI +  +    +++E  L+S++  LN +  V GILVQLP+P  INE  +  AI+ +
Sbjct: 64  CAEVGIKSFDVGLPEEVSEADLISKVHELNSNPDVHGILVQLPLPKHINEEHILGAISID 123

Query: 416 KDIDGFHIINIGRLCVD--LPTIVPAT 490
           KD+DGFH +NIG+L +    P  +P T
Sbjct: 124 KDVDGFHPLNIGKLAMKGREPLFLPCT 150


>At4g00600.1 68417.m00084 tetrahydrofolate
           dehydrogenase/cyclohydrolase, putative similar to
           SP|P09440 C-1-tetrahydrofolate synthase, mitochondrial
           precursor (C1-THF synthase) [Includes:
           Methylenetetrahydrofolate dehydrogenase (EC 1.5.1.5);
           Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9);
           Formyltetrahydrofolate synthetase (EC 6.3.4.3)
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF02882: Tetrahydrofolate dehydrogenase/cyclohydrolase,
           NAD(P)-binding domain, PF00763: Tetrahydrofolate
           dehydrogenase/cyclohydrolase, catalytic domain
          Length = 310

 Score = 75.8 bits (178), Expect = 2e-14
 Identities = 42/127 (33%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
 Frame = +2

Query: 119 LKQKIAQW-VSLGNRAPTIRCIIVGDDPASHTYVRNKVEAAKFVGIDALTINRDSDITEE 295
           L+   + W  +L  R+ +    IV D  A    +R+ ++       +++ +    D +EE
Sbjct: 34  LRTTASTWRCTLSIRSSSSPSAIVIDGKAEAKKIRDDIKIEVSRMKESIGVVPAEDSSEE 93

Query: 296 QLLSEIQNLNEDNSVDGILVQLPVPDTINERRVCDAIAPEKDIDGFHIINIGRLCV--DL 469
           ++L  +   N+D SV G+LVQLP+P  ++E+ + +A++ EKD+DGFH +NIGRL +    
Sbjct: 94  EVLKYVSGFNDDPSVHGVLVQLPLPSHMDEQNILNAVSIEKDVDGFHPLNIGRLAMRGRE 153

Query: 470 PTIVPAT 490
           P  VP T
Sbjct: 154 PLFVPCT 160


>At2g36010.3 68415.m04422 E2F transcription factor-3 (E2F3)
           identical to E2F transcription factor-3 E2F3
           [Arabidopsis thaliana] gi|10443853|gb|AAG17610
          Length = 485

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 14/38 (36%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = +2

Query: 248 GIDALTINRDSDITEEQLLSEIQNLN-EDNSVDGILVQ 358
           G+DA   + D+D++  QL +EI+NL  E+ ++D  + Q
Sbjct: 232 GVDACPGDEDADVSVLQLQAEIENLALEEQALDNQIRQ 269


>At3g11040.1 68416.m01332 glycosyl hydrolase family 85 protein
           contains similarity to endo-b-N-acetylglucosaminidase
           GI:13774138 from [Mucor hiemalis]
          Length = 701

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 200 ASHTYVRNKVEAAKFVGIDALTINRDSDITEEQL 301
           ++  Y     E A  +G D   IN ++DI EEQ+
Sbjct: 156 SAQMYAERLAELATALGFDGWLINIENDIDEEQI 189


>At2g36010.2 68415.m04421 E2F transcription factor-3 (E2F3)
           identical to E2F transcription factor-3 E2F3
           [Arabidopsis thaliana] gi|10443853|gb|AAG17610
          Length = 514

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
 Frame = +2

Query: 248 GIDALTINRDSDITEEQLLSEIQNLN-EDNSVD 343
           G+DA   + D+D++  QL +EI+NL  E+ ++D
Sbjct: 278 GVDACPGDEDADVSVLQLQAEIENLALEEQALD 310


>At4g00580.1 68417.m00081 COP1-interacting protein-related similar
           to COP1-interacting protein 4 (CIP4) [Arabidopsis
           thaliana] GI:13160646
          Length = 317

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +2

Query: 254 DALTINRDSDITEEQLLSEIQNLNEDNSVDGIL 352
           D   I++D D+  + LL+E+   ++D   +GI+
Sbjct: 190 DLNMIDQDKDLENDNLLAELNQTSDDAEKEGII 222


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,807,614
Number of Sequences: 28952
Number of extensions: 249810
Number of successful extensions: 645
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)