Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10n23r
         (741 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55680.1 68414.m06374 WD-40 repeat family protein contains 2 ...    29   2.4  
At4g03550.1 68417.m00486 glycosyl transferase family 48 protein ...    27   9.9  

>At1g55680.1 68414.m06374 WD-40 repeat family protein contains 2 (1
           significant) WD-40 repeats (PF0400); similar to Trp-Asp
           repeat protein (PIR:T40094) [Schizosaccharomyces]
          Length = 445

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -1

Query: 546 GQTDIWTEKAALFYTMDRLTSTVRYFVIELQLSLLYWNG*RRFFFLM 406
           G+  + T+K ALFY   R T +++  ++  QL  L W   +   +LM
Sbjct: 101 GKDCMATQKGALFYDFWRNTRSIKSSILHFQLRNLVWATSKHDVYLM 147


>At4g03550.1 68417.m00486 glycosyl transferase family 48 protein
            contains Pfam profile: PF02364 1,3-beta-glucan synthase
          Length = 1780

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = -1

Query: 300  YVTSFDQYVNKHFL*SQKQYSILVVFFGHGPILSEIFNIVSVTFHLIFLI 151
            +  ++  Y   HF+ + +   IL+V+  H PI  +    +++T    FL+
Sbjct: 1478 FTENYRLYARSHFVKAIELGLILIVYASHSPIAKDSLIYIAMTITSWFLV 1527


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,256,981
Number of Sequences: 28952
Number of extensions: 248137
Number of successful extensions: 450
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)