Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10n23f
         (593 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    22   4.5  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   5.9  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   5.9  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   5.9  

>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = -2

Query: 307 FEGLYFAGVPRSLIRGPVI--DRVHLSR*RIQIKVLFVVVITKALRFTAPRYATINR 143
           F G++   + R  I    +   ++   R   +IK+   +V      FTA R+  +NR
Sbjct: 260 FSGIFLCDLIRREIANVQVLAYKIEAKRRDNEIKMFVKIVDASCRNFTAARFFELNR 316


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 453 FTESLP*YKTFTILPVLFL 397
           F ES+P Y  F   P++FL
Sbjct: 191 FAESIPPYLFFVPPPLMFL 209



 Score = 21.0 bits (42), Expect = 7.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 2   NISVRLLAAGLIAHISD*IHNDCS 73
           N+SV +L +GLIA       ++CS
Sbjct: 167 NLSVPVLLSGLIAMCGMYYRDECS 190


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 453 FTESLP*YKTFTILPVLFL 397
           F ES+P Y  F   P++FL
Sbjct: 424 FAESIPPYLFFVPPPLMFL 442



 Score = 21.0 bits (42), Expect = 7.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 2   NISVRLLAAGLIAHISD*IHNDCS 73
           N+SV +L +GLIA       ++CS
Sbjct: 400 NLSVPVLLSGLIAMCGMYYRDECS 423


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 453 FTESLP*YKTFTILPVLFL 397
           F ES+P Y  F   P++FL
Sbjct: 424 FAESIPPYLFFVPPPLMFL 442



 Score = 21.0 bits (42), Expect = 7.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 2   NISVRLLAAGLIAHISD*IHNDCS 73
           N+SV +L +GLIA       ++CS
Sbjct: 400 NLSVPVLLSGLIAMCGMYYRDECS 423


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,868
Number of Sequences: 336
Number of extensions: 2674
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14935063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)