Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10n23f
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|...    27   1.6  
SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos...    27   2.1  
SPBC3B9.06c |apg3||autophagy associated protein Apg3 |Schizosacc...    27   2.7  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   2.7  
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    26   4.8  
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    25   6.3  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    25   8.3  

>SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 371 EEPVIRATYKNSTGKIVNVLYYGS 442
           EE V+R TY+ S   +  VLYY S
Sbjct: 268 EEAVVRETYEESGVDVEKVLYYAS 291


>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
           5-trisphosphate3-phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +2

Query: 449 VKNFYRSCDKDVAKYMFTRVNEDYILGINCSSE 547
           +   YR+ + DV KY+ T++ +++IL   C+ E
Sbjct: 46  IHKLYRNDELDVFKYLTTQLKDNWILLNLCAEE 78


>SPBC3B9.06c |apg3||autophagy associated protein Apg3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 275

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 565 QQHATPLRRAIDAQNVILVDPREHVLS-DVLVA 470
           ++H TP  +  D +N  ++ P E VL+ D LV+
Sbjct: 13  REHITPASKTSDFENTGMISPEEFVLAGDYLVS 45


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 25/97 (25%), Positives = 42/97 (43%)
 Frame = +3

Query: 249 SITGPRIRERGTPAKYKPSKNSIHTK*KPLGTAARTSASLQRSRSSGPRTRTAPAKS*TS 428
           SIT   +      +    S ++  +      T + TSA+   S +S   + TA + S TS
Sbjct: 133 SITSSSLASSSITSSSLASSSTTSSSLASSSTNSTTSATPTSSATSSSLSSTAASNSATS 192

Query: 429 CTMGAIR*RTSTGPATRTSLSTCSRGSTRITFWASIA 539
            ++ +     ST  AT TS S  S  ++     +S+A
Sbjct: 193 SSLASSS-LNSTTSATATSSSLSSTAASNSATSSSLA 228


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -1

Query: 209 SLRCCNN*GIALHCSAIC 156
           SL C +N G++L+CS+ C
Sbjct: 201 SLSCLDNTGVSLNCSSSC 218


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
 Frame = +3

Query: 225 RYRDKCTRSITGPRIRERGTPAKYKPSKNSIHTK*KPLGTAARTSASL--------QRSR 380
           +YR    + + G R RE+    K KP K +  TK K L T +    +         +RS+
Sbjct: 539 KYRPNARKPLVG-RHREKRQLRKEKPEKKNNSTKQKDLITVSHNKGTTAIEDLDEDKRSK 597

Query: 381 SSGPRTRTA 407
           + G +T+++
Sbjct: 598 TKGHKTKSS 606


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +2

Query: 344 GC-SNLSLPSEEPVIRATYKNSTG 412
           GC +N++ P +EP    T K STG
Sbjct: 141 GCFANITFPMDEPSTIGTLKKSTG 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,165,540
Number of Sequences: 5004
Number of extensions: 41785
Number of successful extensions: 151
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)