Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10n23f
         (593 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0834 - 20167554-20167716,20169488-20169598,20169716-201698...    30   1.2  
03_01_0618 + 4543013-4543111,4544100-4544177,4544739-4544873,454...    30   1.6  
12_01_0645 - 5468344-5470266                                           29   2.1  
01_06_0521 + 30001662-30001752,30001883-30001999,30002099-300022...    29   2.1  
09_03_0211 + 13511893-13512259,13512563-13513038                       29   3.7  
07_03_0845 - 21979581-21981281                                         28   4.9  
03_01_0012 - 101584-101898,102274-102531,102932-103474                 28   4.9  
06_03_1488 + 30484904-30485134,30485239-30487159,30487255-304876...    27   8.5  

>04_03_0834 -
           20167554-20167716,20169488-20169598,20169716-20169801,
           20169901-20170011
          Length = 156

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
 Frame = +2

Query: 74  EYNVLSNNMETVV--FFLIITSFFCAIN-----CRISRSSEAQCLSYYNNEENFDLDTLS 232
           EYNV + N    +  F  I+    C +      C I   ++   LSY++ E+  DLDTLS
Sbjct: 2   EYNVRAENYMCHISYFIFILKQMECNVRAENYICTIEIRNDFAILSYFSIEKPLDLDTLS 61


>03_01_0618 +
           4543013-4543111,4544100-4544177,4544739-4544873,
           4544971-4545078,4545397-4545525,4546191-4546306,
           4546392-4546509,4547274-4547379,4547492-4547631,
           4547735-4547905,4547984-4548094,4548206-4548317,
           4548615-4548943,4549064-4549154,4549542-4549637,
           4549710-4549780,4549868-4549980,4550353-4550434
          Length = 734

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +2

Query: 257 WPPNQRTRNACEVQTFKKLDTYEIETARNGCSNLSLPSE 373
           +P N+ +RN C V TFKKL     ++   G +NL L  E
Sbjct: 332 FPVNRASRNVCRVDTFKKLMQVATKSLEMG-TNLMLGVE 369


>12_01_0645 - 5468344-5470266
          Length = 640

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 21/69 (30%), Positives = 34/69 (49%)
 Frame = -2

Query: 547 LRRAIDAQNVILVDPREHVLSDVLVAGPVEVLHRIAPIVQDVHDFAGAVLVRGPDDRLL* 368
           LR+AI+A ++++VD  + + SDV +       HR+    + V       +  G  DR+L 
Sbjct: 130 LRKAIEALDMVIVDIAKRLPSDVRLTQEQLDQHRLQLYRRTVDFTQRYFMTAGFKDRVLG 189

Query: 367 REAEVRAAV 341
           RE E    V
Sbjct: 190 REKETDVIV 198


>01_06_0521 +
           30001662-30001752,30001883-30001999,30002099-30002229,
           30002320-30002370,30002639-30002689,30002864-30003007,
           30003082-30003224,30003376-30003448,30003540-30003635,
           30003737-30003835,30003905-30003958,30004032-30004155,
           30004420-30004544,30004720-30004842,30004948-30005028
          Length = 500

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/49 (34%), Positives = 29/49 (59%)
 Frame = -2

Query: 388 PDDRLL*REAEVRAAVPSGFYFVCIEFFEGLYFAGVPRSLIRGPVIDRV 242
           P++RLL    E R+ +P+ +  V +  F    FAG  R+++RGP++  V
Sbjct: 188 PENRLLVMNPESRSILPTEYLGVKMVSFG---FAGQGRAIMRGPMVSGV 233


>09_03_0211 + 13511893-13512259,13512563-13513038
          Length = 280

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +2

Query: 188 SYYNNEENFDLDTLSGQMYAVYYWPPNQRTRNACEVQTFK 307
           S YN  E + L++  G+++ +Y++PP   +    E+  +K
Sbjct: 157 SVYNFREIYLLES-RGELFCLYFYPPGACSNKTVEISVYK 195


>07_03_0845 - 21979581-21981281
          Length = 566

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 195 TTTKRTLIWIRYRDKCTRSITGPRIR 272
           TT+K+ +IW+  RD    S T P ++
Sbjct: 74  TTSKKAVIWVANRDNPVTSATSPELK 99


>03_01_0012 - 101584-101898,102274-102531,102932-103474
          Length = 371

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +2

Query: 329 ETARNGCSNLSLPSEEPVIRATYKNSTGKIVNVLY--YGSDSVK 454
           + A +GC ++ + ++E V+    + + GK VNV+Y   G D+ K
Sbjct: 224 QAAEDGCHHVIIYTKEDVVTRVKEFTAGKGVNVVYDSVGKDTYK 267


>06_03_1488 +
           30484904-30485134,30485239-30487159,30487255-30487691,
           30487777-30487983
          Length = 931

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = +2

Query: 350 SNLSLPSEEPVIRATYKNSTG---KIVNVLYYGSDSVKNFYRSCDK 478
           SNL LPS+  +I  T   S        +++ YGS SV   YR C K
Sbjct: 136 SNLKLPSKLEMITVTSPRSATFRQSKCSLISYGSSSVDYTYRHCLK 181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,178,197
Number of Sequences: 37544
Number of extensions: 271860
Number of successful extensions: 807
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)