Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10n23f
(593 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93391-7|CAB07685.3| 405|Caenorhabditis elegans Hypothetical pr... 34 0.088
U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical pr... 33 0.12
M77697-3|AAA27898.3| 616|Caenorhabditis elegans Hypothetical pr... 32 0.35
AF067613-11|AAN73862.2| 334|Caenorhabditis elegans Serpentine r... 29 1.9
U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical pr... 29 2.5
AF067623-5|AAC17555.3| 1043|Caenorhabditis elegans Guanylyl cycl... 28 4.4
AB201390-1|BAE78830.1| 1073|Caenorhabditis elegans recepotor typ... 28 4.4
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch... 28 5.8
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch... 28 5.8
AF047663-1|AAC04453.2| 322|Caenorhabditis elegans Delta/serrate... 28 5.8
AY733040-1|AAW57534.1| 1425|Caenorhabditis elegans death-associa... 27 7.6
AF043701-1|AAK18971.2| 1425|Caenorhabditis elegans Dap (death-as... 27 7.6
>Z93391-7|CAB07685.3| 405|Caenorhabditis elegans Hypothetical
protein W04G5.9 protein.
Length = 405
Score = 33.9 bits (74), Expect = 0.088
Identities = 22/71 (30%), Positives = 37/71 (52%)
Frame = +3
Query: 309 NSIHTK*KPLGTAARTSASLQRSRSSGPRTRTAPAKS*TSCTMGAIR*RTSTGPATRTSL 488
+++ T KP+ TA R++A + +++S AP K+ T+ T+ T+T P T T
Sbjct: 105 STLKTTTKPVITATRSTARITTTKASTLEPPEAPTKASTARTISTT--ETTTSPPTTTVT 162
Query: 489 STCSRGSTRIT 521
+R ST T
Sbjct: 163 PRTTRSSTART 173
>U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical
protein F59A6.3 protein.
Length = 786
Score = 33.5 bits (73), Expect = 0.12
Identities = 23/59 (38%), Positives = 33/59 (55%)
Frame = +3
Query: 345 AARTSASLQRSRSSGPRTRTAPAKS*TSCTMGAIR*RTSTGPATRTSLSTCSRGSTRIT 521
A+ TS S Q S +SGP T + P+ + S T++GP+T + ST S GST+ T
Sbjct: 543 ASTTSGSTQ-STTSGPSTSSGPSTASRSTVSTTSGPSTTSGPSTTSGPSTTS-GSTKST 599
Score = 28.7 bits (61), Expect = 3.3
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Frame = +3
Query: 282 TPAKYKPSKNSIHTK*KPLGTAARTSASLQR-SRSSGPRTRTAPA-KS*TSCTMGAIR*R 455
TP S ++ T P ++ ++AS S +SGP T + P+ S S T G+ +
Sbjct: 540 TPGASTTSGSTQSTTSGPSTSSGPSTASRSTVSTTSGPSTTSGPSTTSGPSTTSGSTK-S 598
Query: 456 TSTGPATRT--SLSTCSRGSTRITFWASIARRRG 551
T++GP+T + ++ST S T T A+I+ G
Sbjct: 599 TTSGPSTTSGKNISTVSGKLTGSTTSATISSAFG 632
Score = 27.5 bits (58), Expect = 7.6
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +3
Query: 354 TSASLQRSRSSGPRTRTAPAKS*TSCTMGAIR*RTSTGPATR--TSLSTCSRGST 512
T + + +S +SGP T + P+ + S T++GP+T T+ ST S ST
Sbjct: 403 TISGISQSTTSGPTTTSEPSTTSGSTVSDTSGPSTTSGPSTTLGTTQSTTSGPST 457
>M77697-3|AAA27898.3| 616|Caenorhabditis elegans Hypothetical
protein B0303.4 protein.
Length = 616
Score = 31.9 bits (69), Expect = 0.35
Identities = 22/61 (36%), Positives = 30/61 (49%)
Frame = +2
Query: 311 LDTYEIETARNGCSNLSLPSEEPVIRATYKNSTGKIVNVLYYGSDSVKNFYRSCDKDVAK 490
LD E+E + SE PVI S GKI+ L + +D+ KN Y S + VAK
Sbjct: 311 LDDQEVEAQPEQVLQETKESEFPVIEGP---SEGKILIKLKFMNDTEKNTYASLEDTVAK 367
Query: 491 Y 493
+
Sbjct: 368 F 368
>AF067613-11|AAN73862.2| 334|Caenorhabditis elegans Serpentine
receptor, class z protein19 protein.
Length = 334
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/79 (16%), Positives = 34/79 (43%)
Frame = +2
Query: 77 YNVLSNNMETVVFFLIITSFFCAINCRISRSSEAQCLSYYNNEENFDLDTLSGQMYAVYY 256
Y++ N++E ++ L I +FC++ + + L + L+ + +Y+
Sbjct: 94 YDIFGNSIENAIYGLTIVMWFCSVTVLVGLTEAFNILLFL----------LAVSRFTIYF 143
Query: 257 WPPNQRTRNACEVQTFKKL 313
WP ++ + K++
Sbjct: 144 WPTTEKVVKILQTNGHKRV 162
>U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical protein
B0207.5 protein.
Length = 3279
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 200 NEENFDLDTLSGQMYAVYYWPPNQRTRNACEVQTFKKLDTYEIETARNGC 349
N E D+DTLS + Y+ + QR C+ ++++ E E R C
Sbjct: 1722 NCETVDVDTLSDKEYSRFQKECRQRPEFECKDAKVERMNAQEYEEYRKKC 1771
>AF067623-5|AAC17555.3| 1043|Caenorhabditis elegans Guanylyl cyclase
protein 23 protein.
Length = 1043
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 239 MYAVYYWPPNQRT-RNACEVQTFKKLDTYEIETARNGCSNLSL 364
+YA +Y PPN T R CE++ + +T NGC L +
Sbjct: 354 VYAAFYVPPNSDTVRKVCELEPVMLTNCDGTKTG-NGCYELQV 395
>AB201390-1|BAE78830.1| 1073|Caenorhabditis elegans recepotor type
guanyly cyclase protein.
Length = 1073
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 239 MYAVYYWPPNQRT-RNACEVQTFKKLDTYEIETARNGCSNLSL 364
+YA +Y PPN T R CE++ + +T NGC L +
Sbjct: 384 VYAAFYVPPNSDTVRKVCELEPVMLTNCDGTKTG-NGCYELQV 425
>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
protein 1 protein.
Length = 4568
Score = 27.9 bits (59), Expect = 5.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -2
Query: 313 EFFEGLYFAGVPRSLIRGPVIDRVHLS 233
+FF G + G+ L+R P+ DR +L+
Sbjct: 1824 QFFYGFEYLGIQERLVRTPLTDRCYLT 1850
>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
protein.
Length = 4568
Score = 27.9 bits (59), Expect = 5.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -2
Query: 313 EFFEGLYFAGVPRSLIRGPVIDRVHLS 233
+FF G + G+ L+R P+ DR +L+
Sbjct: 1824 QFFYGFEYLGIQERLVRTPLTDRCYLT 1850
>AF047663-1|AAC04453.2| 322|Caenorhabditis elegans
Delta/serrate/lag-2 domain protein2 protein.
Length = 322
Score = 27.9 bits (59), Expect = 5.8
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +2
Query: 347 CSNLSLPSEEPVIRATYKNSTGKIVNVLYYGSDSVKN-FY 463
C N++ P E P R + GKI VL + VKN FY
Sbjct: 209 CQNVTFPPEMPKFRTVMLGANGKIFKVL-ENKNLVKNEFY 247
>AY733040-1|AAW57534.1| 1425|Caenorhabditis elegans death-associated
protein kinase protein.
Length = 1425
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 167 SSEAQCLSYYNNEENFDLDTLSGQMYAVYYWPPNQRTRNACEVQT 301
S+ +S NN +FDL +G YA PP+ + +VQT
Sbjct: 755 STNGSFVSESNNNSSFDLAAAAGSKYA----PPHSQYTRGIDVQT 795
>AF043701-1|AAK18971.2| 1425|Caenorhabditis elegans Dap
(death-associated protein)kinase homolog protein 1
protein.
Length = 1425
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 167 SSEAQCLSYYNNEENFDLDTLSGQMYAVYYWPPNQRTRNACEVQT 301
S+ +S NN +FDL +G YA PP+ + +VQT
Sbjct: 755 STNGSFVSESNNNSSFDLAAAAGSKYA----PPHSQYTRGIDVQT 795
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,251,759
Number of Sequences: 27780
Number of extensions: 247738
Number of successful extensions: 880
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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