Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10n23f
         (593 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.74 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.74 
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   3.0  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   3.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   6.9  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   9.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   9.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   9.1  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.6 bits (51), Expect = 0.74
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -2

Query: 430 QDVHDFAGAVLVRGPDDRLL*REAEVRAAVPSGFYFVCIEFFEG 299
           QDVH  A   +      R+L R+ +VRA V    Y V +E   G
Sbjct: 99  QDVHSAAYRCVASNSVGRVLSRDVQVRAVVAQA-YKVDVEVIGG 141


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.6 bits (51), Expect = 0.74
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -2

Query: 430 QDVHDFAGAVLVRGPDDRLL*REAEVRAAVPSGFYFVCIEFFEG 299
           QDVH  A   +      R+L R+ +VRA V    Y V +E   G
Sbjct: 99  QDVHSAAYRCVASNSVGRVLSRDVQVRAVVAQA-YKVDVEVIGG 141


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 246 RSITGPRIRERGTPAKYKPSKN 311
           R   GP+  ERG P  ++  KN
Sbjct: 502 RIFIGPKEDERGLPFTFREQKN 523


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +1

Query: 382 HQGHVQEQHRQNRERLVLWER 444
           HQ   Q+QH Q  E+ +++++
Sbjct: 186 HQSQAQQQHLQAHEQHMMYQQ 206


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 60   ITIAVNTTYYRITWKLW 110
            I++ VNT    + WK+W
Sbjct: 1007 ISLDVNTPKGNMQWKIW 1023


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -3

Query: 339 LAVSISYVSSFLKVCTSQ 286
           LAV++ +V+SFL V  +Q
Sbjct: 10  LAVNVLFVNSFLFVIAAQ 27


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -3

Query: 339 LAVSISYVSSFLKVCTSQ 286
           LAV++ +V+SFL V  +Q
Sbjct: 10  LAVNVLFVNSFLFVIAAQ 27


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -3

Query: 339 LAVSISYVSSFLKVCTSQ 286
           LAV++ +V+SFL V  +Q
Sbjct: 10  LAVNVLFVNSFLFVIAAQ 27


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,217
Number of Sequences: 438
Number of extensions: 3388
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)