Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10n23f
         (593 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43070.1 68418.m05258 MFP1 attachment factor, putative contai...    36   0.027
At1g47200.1 68414.m05223 MFP1 attachment factor, putative contai...    30   1.0  
At2g39910.1 68415.m04905 expressed protein                             29   2.3  
At5g37010.1 68418.m04438 expressed protein                             28   4.1  
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR...    28   4.1  
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR...    28   4.1  
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR...    28   4.1  
At3g24430.1 68416.m03066 expressed protein contains Pfam profile...    28   5.4  
At3g49710.1 68416.m05435 pentatricopeptide (PPR) repeat-containi...    27   7.1  
At5g28646.1 68418.m03507 wave-dampened2 (WVD2) nearly identical ...    27   9.4  
At3g51540.1 68416.m05644 expressed protein mucin 5AC, Homo sapie...    27   9.4  

>At5g43070.1 68418.m05258 MFP1 attachment factor, putative contains
           similarity to MFP1 attachment factor 1 similar to MFP1
           attachment factor 1 [Glycine max] gi|7546729|gb|AAF63659
          Length = 155

 Score = 35.5 bits (78), Expect = 0.027
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
 Frame = +2

Query: 257 WPPNQRTRNACEVQTFKKLDTYEIETARNGCSNLSLPSEE-PVIRATYKNSTGKIVNVLY 433
           WPP Q+TR+A   +  + L T  I + R G    SL SEE   +  + ++    I +   
Sbjct: 45  WPPTQKTRDAVINRLIETLSTESILSKRFG----SLESEEASSVAKSIEDEAYAIASATV 100

Query: 434 YGSDSVKNFYRSCDKDVAKYMFTRV 508
           +G D      ++  K+++K M   V
Sbjct: 101 FGDDDGIEILKAYSKEISKRMLESV 125


>At1g47200.1 68414.m05223 MFP1 attachment factor, putative contains
           similarity to MFP1 attachment factor 1 GI:7546725 from
           [Lycopersicon esculentum] similar to MFP1 attachment
           factor 1 [Glycine max] gi|7546729|gb|AAF63659
          Length = 180

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 22/84 (26%), Positives = 35/84 (41%)
 Frame = +2

Query: 257 WPPNQRTRNACEVQTFKKLDTYEIETARNGCSNLSLPSEEPVIRATYKNSTGKIVNVLYY 436
           WPP Q+TR+A   +  + L T  I + R G   L       V +   + + G   N +  
Sbjct: 61  WPPTQKTRDAVLNRLIETLSTESILSKRYG--TLKSDDATTVAKLIEEEAYGVASNAVSS 118

Query: 437 GSDSVKNFYRSCDKDVAKYMFTRV 508
             D +K       K+++K M   V
Sbjct: 119 DDDGIK-ILELYSKEISKRMLESV 141


>At2g39910.1 68415.m04905 expressed protein
          Length = 436

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +1

Query: 388 GHVQEQHRQNRERLVLWERFGEELLQVL 471
           GH++ Q R N+ER + W RF E LL  L
Sbjct: 294 GHLERQPR-NKERRITWLRFVEPLLNSL 320


>At5g37010.1 68418.m04438 expressed protein
          Length = 637

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +3

Query: 261 PRIRERGTPAKYKPSKNSIHTK*KPLGTAARTSASLQRSRSSGPRTRTAPAKS 419
           PR R R TP++ +    S  +  +  G++     S + SRS G R+   P  S
Sbjct: 177 PRERRRRTPSRERDDSKSNRSGSRERGSSGNGGGSRRVSRSPGRRSEINPNSS 229


>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
           protein identical to SP|O22315 Pre-mRNA splicing factor
           SF2 (SR1 protein) {Arabidopsis thaliana}
          Length = 303

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +3

Query: 246 RSITGPRIRERGTPAKYKPSKNSIHTK*KPLGTAARTSASLQRSRSSGPRTRT 404
           RS +  R R RG       S++   ++  P   ++R S +   SRS GPR+++
Sbjct: 208 RSYSKSRSRSRGRSVSRSRSRSRSRSR-SPKAKSSRRSPAKSTSRSPGPRSKS 259


>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
           protein identical to SP|O22315 Pre-mRNA splicing factor
           SF2 (SR1 protein) {Arabidopsis thaliana}
          Length = 285

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +3

Query: 246 RSITGPRIRERGTPAKYKPSKNSIHTK*KPLGTAARTSASLQRSRSSGPRTRT 404
           RS +  R R RG       S++   ++  P   ++R S +   SRS GPR+++
Sbjct: 208 RSYSKSRSRSRGRSVSRSRSRSRSRSR-SPKAKSSRRSPAKSTSRSPGPRSKS 259


>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
           protein identical to SP|O22315 Pre-mRNA splicing factor
           SF2 (SR1 protein) {Arabidopsis thaliana}
          Length = 303

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +3

Query: 246 RSITGPRIRERGTPAKYKPSKNSIHTK*KPLGTAARTSASLQRSRSSGPRTRT 404
           RS +  R R RG       S++   ++  P   ++R S +   SRS GPR+++
Sbjct: 208 RSYSKSRSRSRGRSVSRSRSRSRSRSR-SPKAKSSRRSPAKSTSRSPGPRSKS 259


>At3g24430.1 68416.m03066 expressed protein contains Pfam profile
           PF01883: Domain of unknown function
          Length = 532

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = -2

Query: 388 PDDRLL*REAEVRAAVPSGFYFVCIEFFEGLYFAGVPRSLIRGPVIDRV 242
           P+ R+L    E +  +P+ +  V +  F    FAG  R+++RGP++  V
Sbjct: 226 PESRILEMNPEKKTIIPTEYMGVKLVSFG---FAGQGRAIMRGPMVSGV 271


>At3g49710.1 68416.m05435 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 721

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 19/70 (27%), Positives = 33/70 (47%)
 Frame = +2

Query: 341 NGCSNLSLPSEEPVIRATYKNSTGKIVNVLYYGSDSVKNFYRSCDKDVAKYMFTRVNEDY 520
           + CSNLS PS+   I      S     N +   +  +  +Y+S +   A+++F R+ E  
Sbjct: 353 SACSNLSSPSQCKQIHGLAIKSHIPS-NRISVNNALISLYYKSGNLQDARWVFDRMPELN 411

Query: 521 ILGINCSSEG 550
            +  NC  +G
Sbjct: 412 AVSFNCMIKG 421


>At5g28646.1 68418.m03507 wave-dampened2 (WVD2) nearly identical to
           WAVE-DAMPENED2 [Arabidopsis thaliana] GI:28453880
          Length = 293

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 190 TKALRFTAPRYATINRAEKRSDYQKE 113
           +K    TAPR+ +  RAEKR + ++E
Sbjct: 79  SKVTHGTAPRFRSAQRAEKRKEEEQE 104


>At3g51540.1 68416.m05644 expressed protein mucin 5AC, Homo sapiens,
           PIR:S53363
          Length = 438

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 32/104 (30%), Positives = 48/104 (46%)
 Frame = +3

Query: 243 TRSITGPRIRERGTPAKYKPSKNSIHTK*KPLGTAARTSASLQRSRSSGPRTRTAPAKS* 422
           +RS+T P  R+  +P    PS+ S  T   P   + +T+   QRSRS  PR +   A + 
Sbjct: 156 SRSLT-PSSRKTPSPTS-TPSRISTTTSTTP---SFKTAGDAQRSRSLTPRAKPQIAANA 210

Query: 423 TSCTMGAIR*RTSTGPATRTSLSTCSRGSTRITFWASIARRRGV 554
           +S T       TS  P   T++S   R   R+    ++A  R V
Sbjct: 211 SSRTNVRSSSVTSR-PDRSTTVSATPRTPPRLKETVTLAFGRPV 253


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,269,359
Number of Sequences: 28952
Number of extensions: 216870
Number of successful extensions: 673
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)