Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10n22r
         (760 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56964| Best HMM Match : Zona_pellucida (HMM E-Value=0)              34   0.14 
SB_16098| Best HMM Match : Abhydrolase_1 (HMM E-Value=4.5e-22)         31   0.77 
SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  

>SB_56964| Best HMM Match : Zona_pellucida (HMM E-Value=0)
          Length = 908

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +2

Query: 590 DYNTTCDIVFSH*NCIISKLTNFTGECFKGLTCDIFNINHLC 715
           DYN  C   F+  NC  +  +N+   C+ G TC + N  H C
Sbjct: 211 DYNCACRPGFTGKNCETATCSNYN-PCYNGGTCGLVNNRHQC 251


>SB_16098| Best HMM Match : Abhydrolase_1 (HMM E-Value=4.5e-22)
          Length = 863

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 21/72 (29%), Positives = 33/72 (45%)
 Frame = -3

Query: 554 ERLYNHFCETSLKIKSRYAQNLHFHKSL*KKHRFSLGLLSLYIYYCYQLRTW*FIKKIFI 375
           E L +H+ E   K    +A+     K++    R   G+LSLY YY        F+++ F 
Sbjct: 1   EFLQDHYDEDPEKYTEEFARYRKLRKTMCNPSRDKDGILSLYEYYNQMY----FVERKFF 56

Query: 374 YLLGSMVFFFKY 339
              GSM  +F +
Sbjct: 57  PKRGSMAVYFHW 68


>SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5445

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +2

Query: 572  KC-HLKSDYNTTCDIVFSH*NCIISKLTNFTGECFKGLTCDIFNINHLCNIY 724
            KC  +  D+   C   F+  NC + K    +  C  G TC++ +  + C  +
Sbjct: 2595 KCTEMIRDFQCECSAEFTGKNCELRKTNCSSNPCQNGGTCNVTDTGYKCECF 2646


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,151,318
Number of Sequences: 59808
Number of extensions: 389567
Number of successful extensions: 825
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)