Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10n22r
         (760 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    24   1.8  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    23   3.1  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    23   3.1  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    23   3.1  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    23   3.1  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   4.1  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   9.5  

>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 39  NKNKTSHTVHYGSKYSNLTFFNII 110
           N N  ++  +Y + Y  L ++NII
Sbjct: 95  NNNYNNYNNNYNTNYKKLQYYNII 118


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 54  SHTVHYGSKYSNLTFFNIIY 113
           ++T+H  + Y  L ++NI Y
Sbjct: 309 NNTIHNNNNYKKLQYYNINY 328


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 54  SHTVHYGSKYSNLTFFNIIY 113
           ++T+H  + Y  L ++NI Y
Sbjct: 320 NNTIHNNNNYKKLQYYNINY 339


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 54  SHTVHYGSKYSNLTFFNIIY 113
           ++T+H  + Y  L ++NI Y
Sbjct: 320 NNTIHNNNNYKKLQYYNINY 339


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 54  SHTVHYGSKYSNLTFFNIIY 113
           ++T+H  + Y  L ++NI Y
Sbjct: 309 NNTIHNNNNYKKLQYYNINY 328


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = -3

Query: 542 NHFCETSLKIKSRYAQNLHFHKSL*KKHRFSLGLLSLYIYYCY 414
           NH   T     S + + L FH +  +K   +LG++      C+
Sbjct: 343 NHLNSTCSVTNSPHQKKLRFHLAKERKASTTLGIIMSAFIVCW 385


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 620 RRRCHTLCCNQILNDIFFRVIKER 549
           R + +  CC++   DIFF +   R
Sbjct: 210 RHKKYYPCCDEPYPDIFFNITLRR 233


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,081
Number of Sequences: 438
Number of extensions: 3734
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)