Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10n22r
         (760 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19330.1 68417.m02848 kelch repeat-containing F-box family pr...    29   2.5  
At2g14570.1 68415.m01632 SWIM zinc finger family protein               28   5.9  

>At4g19330.1 68417.m02848 kelch repeat-containing F-box family
           protein very low similarity to SKP1 interacting partner
           6 [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 537

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 23/81 (28%), Positives = 38/81 (46%)
 Frame = -3

Query: 620 RRRCHTLCCNQILNDIFFRVIKERLYNHFCETSLKIKSRYAQNLHFHKSL*KKHRFSLGL 441
           +RR   + CNQ+ +DI   ++  R+   + +T L + S+  + L   K L    R  LG 
Sbjct: 168 KRRRSIVACNQLADDIVLNIL-ARISTSYYQT-LSLVSKTFRLLILSKEL-DMERSYLGT 224

Query: 440 LSLYIYYCYQLRTW*FIKKIF 378
               +Y C Q  T  F ++ F
Sbjct: 225 RKPCVYVCLQSPTHPFDRRWF 245


>At2g14570.1 68415.m01632 SWIM zinc finger family protein
          Length = 435

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
 Frame = +2

Query: 428 YREIKDRVRIYV---FFKVICESEDFVRILTLFLKMFHKND 541
           Y + KDR +++     FK++C+    VR+L +FL+   +ND
Sbjct: 70  YEDSKDRRQLFEKDNSFKMMCDGGRCVRVLNVFLEESTEND 110


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,162,272
Number of Sequences: 28952
Number of extensions: 272108
Number of successful extensions: 440
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)