Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10n22f
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomy...   217   1e-57
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    27   2.2  
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|...    27   3.0  
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch...    25   6.8  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    25   9.0  

>SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 482

 Score =  217 bits (530), Expect = 1e-57
 Identities = 102/150 (68%), Positives = 125/150 (83%)
 Frame = +1

Query: 181 RKEKDTFGELDVPDDKLYGAQTVRSVMNFPIGGIEERMPYPVIVAFGILKKAAAKVNIEY 360
           R+E DTFG + VP +K +GAQT RS+ NF IGG +ER+P P++ AFG+LK+AAA VN E+
Sbjct: 21  RQESDTFGPIQVPAEKYWGAQTQRSLQNFRIGGEKERLPLPLVRAFGVLKRAAASVNREF 80

Query: 361 GLEKKIADAIMQACDDVISGKLYREGHFPLVIWQTGSGTQSNMNTNEVIANRAIQILGGK 540
           GL+ K+ADAI QA  +VI G+L  + +FPLV++QTGSGTQSNMN+NEVIANRAI+ILGG 
Sbjct: 81  GLDPKLADAIEQAAQEVIDGRL--DDNFPLVVFQTGSGTQSNMNSNEVIANRAIEILGGT 138

Query: 541 LGSKDPVHPNDHVNKSQSSNDTYPTAMHIA 630
           LGSK PVHPNDHVN SQSSNDT+PT MHIA
Sbjct: 139 LGSKKPVHPNDHVNMSQSSNDTFPTVMHIA 168


>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -2

Query: 480 LSTGASLPDDEGEVTLAVELPADDVIAGLHDRVGNFLFKSIFD 352
           LS+G SLP  E EVT +     DD +A     +     +S  D
Sbjct: 220 LSSGESLPKKEEEVTKSPSFTLDDSVASNEQTLAQLNIESPVD 262


>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 482

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +1

Query: 526 ILGGKLGSKDPVHPNDHVNKSQSS 597
           +L   LG+ D  HP++H+ +++SS
Sbjct: 11  LLANTLGNNDENHPSNHIARAKSS 34


>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = -1

Query: 295 ACVPQFHRSGSSSPNA---RSARHIACHLARPAPQRYL 191
           AC+P+  R     P+     +A  + C LAR AP+ YL
Sbjct: 172 ACIPKL-RERLDDPDTSVVNAAVSVICELARRAPKNYL 208


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 228 LVIWHVQLPKGIFFLPRCNASC*NITFIY 142
           L ++ ++ P+  FFL R N  C NIT +Y
Sbjct: 291 LFLYKIRYPEN-FFLLRGNHECANITRVY 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,665,384
Number of Sequences: 5004
Number of extensions: 55338
Number of successful extensions: 173
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)