Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10n22f
         (631 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42216| Best HMM Match : No HMM Matches (HMM E-Value=.)             232   2e-61
SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022)          29   3.1  
SB_57227| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_56853| Best HMM Match : BTB (HMM E-Value=1.1e-16)                   29   4.1  
SB_42810| Best HMM Match : Beach (HMM E-Value=0)                       28   5.4  
SB_35991| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)                 28   5.4  
SB_34580| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)                 28   5.4  
SB_56590| Best HMM Match : Pox_A32 (HMM E-Value=6.1)                   27   9.5  
SB_53171| Best HMM Match : SpdB (HMM E-Value=7.6)                      27   9.5  
SB_12729| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.3e-08)        27   9.5  
SB_13190| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_42216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 745

 Score =  232 bits (567), Expect = 2e-61
 Identities = 109/163 (66%), Positives = 134/163 (82%), Gaps = 1/163 (0%)
 Frame = +1

Query: 145 NKRNISTTSVTA-RKEKDTFGELDVPDDKLYGAQTVRSVMNFPIGGIEERMPYPVIVAFG 321
           N+ ++S     A R E D+FGE++VP +K YGAQT RS  NFPIG   E+MP+PVI AFG
Sbjct: 195 NRASLSLVRAMATRIETDSFGEIEVPSEKYYGAQTARSKHNFPIGDESEKMPFPVIRAFG 254

Query: 322 ILKKAAAKVNIEYGLEKKIADAIMQACDDVISGKLYREGHFPLVIWQTGSGTQSNMNTNE 501
            LKKAAA+VN E+GL+  +AD IM+A D+VISGKL  + HFPLV+WQTGSGTQSNMN NE
Sbjct: 255 YLKKAAAEVNKEFGLDGPVADNIMRAADEVISGKL--KDHFPLVVWQTGSGTQSNMNVNE 312

Query: 502 VIANRAIQILGGKLGSKDPVHPNDHVNKSQSSNDTYPTAMHIA 630
           VI+NRAI+++GG++GSK PVHPNDHVNKSQSSNDT+PTAMH+A
Sbjct: 313 VISNRAIELMGGEMGSKKPVHPNDHVNKSQSSNDTFPTAMHVA 355


>SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022)
          Length = 1671

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +1

Query: 67  MATSIFKFSSSLINTSKNYRCVLRLINKRNISTTSVTARKE--KDTFGELD 213
           +   I KF+  ++N  KN++ +L  I K  IS + +T   E  +   G LD
Sbjct: 728 LINKILKFAKDIVNRLKNWKWLLGKIKKIQISLSKLTIVDEIFRKVLGALD 778


>SB_57227| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 712

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 325 LKKAAAKVNIEYGLEKKIADAIMQACDDVISGKLYREG 438
           LK    K N ++G++ K  DAI   CD V +  + ++G
Sbjct: 429 LKNKELKANTQHGIQIKTLDAIFIHCDLVSASGVLKQG 466


>SB_56853| Best HMM Match : BTB (HMM E-Value=1.1e-16)
          Length = 605

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +3

Query: 471 RYSVQHEHERGDCEPRHTNTGRETGQQGPGASQRPREQVAELERHV 608
           +YS Q +H R DC       G+   Q   G SQ  RE     ++HV
Sbjct: 353 QYSQQQQHPR-DCPQIKLYRGQHYEQGNIGCSQGARENFLHTDKHV 397


>SB_42810| Best HMM Match : Beach (HMM E-Value=0)
          Length = 667

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 620 MAVGYVSFELCDLFTWSLGCTGSL 549
           +AVG+V+F +C +  W +G T  L
Sbjct: 266 VAVGFVNFSMCWMNVWCMGLTAHL 289


>SB_35991| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)
          Length = 669

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +1

Query: 460 QTGSGTQSNMNTNEVIANRAIQILGGKLGSKDPVHPNDHVNKSQSS 597
           QTG    +N   N+++ N  +++   + GS+ P HP   +N    S
Sbjct: 397 QTGQRNLTNKLRNKLLMNLHVRLRRWRRGSRAPNHPRPDLNTLDES 442


>SB_34580| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)
          Length = 953

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +1

Query: 460 QTGSGTQSNMNTNEVIANRAIQILGGKLGSKDPVHPNDHVNKSQSS 597
           QTG    +N   N+++ N  +++   + GS+ P HP   +N    S
Sbjct: 597 QTGQRNLTNKLRNKLLMNLHVRLRRWRRGSRAPNHPRPDLNTLDES 642


>SB_56590| Best HMM Match : Pox_A32 (HMM E-Value=6.1)
          Length = 740

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +1

Query: 448 LVIWQTGSGTQSNMNTNEVIANRAIQILGGKLGSKDPVHPNDHVNKSQSS 597
           L + QTG    +N   N+++ N  +++ G    S+ P HP   +N    S
Sbjct: 419 LPVRQTGQRNLTNKLRNKLLMNLHVRLRGWWRESRAPSHPRPDLNTLDES 468


>SB_53171| Best HMM Match : SpdB (HMM E-Value=7.6)
          Length = 414

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 172 VTARKEKDTFGELDVPDDKL-YGAQTVRSVMNFPIGGIEERMPYPVIVAF 318
           V AR+   TFG  DVP   +  G    ++++NF +G     +P   + +F
Sbjct: 76  VRARRTTQTFGNADVPRTAIRMGGGESKNLINFALGQDIGGVPSVTVASF 125


>SB_12729| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.3e-08)
          Length = 1183

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 22/97 (22%), Positives = 43/97 (44%), Gaps = 3/97 (3%)
 Frame = +1

Query: 328 KKAAAKVNIEYGLEKKIADAIMQACDDVISGKLYREGHFPLVIWQTGSGTQSNMNTNEVI 507
           K+   + + E  L K+  D +    D++   + +     P +  Q  +GT+++       
Sbjct: 42  KREKMEKDHEISLLKRTTDTLQ---DEIAQARRHTTASGPHMDGQGQTGTRNSHENVPES 98

Query: 508 ANRAIQILGGKL---GSKDPVHPNDHVNKSQSSNDTY 609
            N   Q  GG+    GS+D  H N H+  +++S D +
Sbjct: 99  RNYTDQQDGGRARAPGSRDTSHRNGHLYSTRNSVDQF 135


>SB_13190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = -2

Query: 300 IRHAFLN--STDREVHHRTHGLR 238
           +RHAF+N  S DR     THGLR
Sbjct: 180 VRHAFMNVPSRDRHKSRGTHGLR 202


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,523,354
Number of Sequences: 59808
Number of extensions: 456096
Number of successful extensions: 1323
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1320
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)