Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10n22f
         (631 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025459-5|AAB70982.1|  501|Caenorhabditis elegans Fumarase prot...   250   5e-67
AF025459-6|AAN63405.1|  328|Caenorhabditis elegans Fumarase prot...    34   0.096
U56963-1|AAB38120.1|  161|Caenorhabditis elegans Hypothetical pr...    33   0.22 
Z68227-18|CAA92521.1|  869|Caenorhabditis elegans Hypothetical p...    30   1.2  
Z68220-11|CAA92493.1|  869|Caenorhabditis elegans Hypothetical p...    30   1.2  
AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igca...    30   1.6  
Z81104-2|CAB70254.1|  233|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z81526-7|CAB04266.2|  330|Caenorhabditis elegans Hypothetical pr...    28   6.3  
U51997-6|AAG24064.1|  159|Caenorhabditis elegans Hypothetical pr...    27   8.4  
AF016662-5|AAB66059.2|  116|Caenorhabditis elegans Hypothetical ...    27   8.4  

>AF025459-5|AAB70982.1|  501|Caenorhabditis elegans Fumarase protein
           1, isoform a protein.
          Length = 501

 Score =  250 bits (613), Expect = 5e-67
 Identities = 124/167 (74%), Positives = 137/167 (82%), Gaps = 3/167 (1%)
 Frame = +1

Query: 139 LINKRNISTTSVTA---RKEKDTFGELDVPDDKLYGAQTVRSVMNFPIGGIEERMPYPVI 309
           L   RN S T+V     RKE+DTFGEL+VP DK YGAQT RS MNF IGG EERMP PVI
Sbjct: 25  LATARNFSRTTVPMAKIRKERDTFGELEVPADKYYGAQTARSQMNFKIGGPEERMPIPVI 84

Query: 310 VAFGILKKAAAKVNIEYGLEKKIADAIMQACDDVISGKLYREGHFPLVIWQTGSGTQSNM 489
            AFGILKKAAA VN E+GL+KK+ADAI QA D+V+ GKL  + HFPLV WQTGSGTQSNM
Sbjct: 85  HAFGILKKAAALVNTEFGLDKKLADAISQAADEVVDGKL--DEHFPLVTWQTGSGTQSNM 142

Query: 490 NTNEVIANRAIQILGGKLGSKDPVHPNDHVNKSQSSNDTYPTAMHIA 630
           N NEVI+NRAI+ILGG+LGSK PVHPNDHVN SQSSNDT+PTAMHIA
Sbjct: 143 NVNEVISNRAIEILGGELGSKKPVHPNDHVNMSQSSNDTFPTAMHIA 189


>AF025459-6|AAN63405.1|  328|Caenorhabditis elegans Fumarase protein
           1, isoform b protein.
          Length = 328

 Score = 33.9 bits (74), Expect = 0.096
 Identities = 14/15 (93%), Positives = 15/15 (100%)
 Frame = +1

Query: 586 SQSSNDTYPTAMHIA 630
           SQSSNDT+PTAMHIA
Sbjct: 2   SQSSNDTFPTAMHIA 16


>U56963-1|AAB38120.1|  161|Caenorhabditis elegans Hypothetical
           protein T13A10.2 protein.
          Length = 161

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 559 PGPCCPVSRPVFVWRGSQSPRSCSCWTEY 473
           P PCC V    +  RG + P+ CSC   Y
Sbjct: 93  PRPCCAVCHDSYASRGPKKPKVCSCLHTY 121


>Z68227-18|CAA92521.1|  869|Caenorhabditis elegans Hypothetical
           protein F49C12.15 protein.
          Length = 869

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 21/78 (26%), Positives = 32/78 (41%)
 Frame = +1

Query: 325 LKKAAAKVNIEYGLEKKIADAIMQACDDVISGKLYREGHFPLVIWQTGSGTQSNMNTNEV 504
           LKK +A  N+   LEKK           +IS K        + ++ TGS   + M+  ++
Sbjct: 604 LKKPSASKNLASLLEKKEEARKTDVTSSMISSKPPTSPGTSVYMYNTGSANSTFMSAKDL 663

Query: 505 IANRAIQILGGKLGSKDP 558
              R     G +  SK P
Sbjct: 664 HKERVAASTGPRSASKSP 681


>Z68220-11|CAA92493.1|  869|Caenorhabditis elegans Hypothetical
           protein F49C12.15 protein.
          Length = 869

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 21/78 (26%), Positives = 32/78 (41%)
 Frame = +1

Query: 325 LKKAAAKVNIEYGLEKKIADAIMQACDDVISGKLYREGHFPLVIWQTGSGTQSNMNTNEV 504
           LKK +A  N+   LEKK           +IS K        + ++ TGS   + M+  ++
Sbjct: 604 LKKPSASKNLASLLEKKEEARKTDVTSSMISSKPPTSPGTSVYMYNTGSANSTFMSAKDL 663

Query: 505 IANRAIQILGGKLGSKDP 558
              R     G +  SK P
Sbjct: 664 HKERVAASTGPRSASKSP 681


>AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igcam
           protein 4 protein.
          Length = 2325

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +1

Query: 64  IMATSIF-KFSSSLINTSKNYRCVLRLINKRNISTTSVTARKEKDTFGELD 213
           ++ATS F +  +S +N  K YRCV R      IS  S+   K  D F   D
Sbjct: 72  LIATSKFCEVQASRVNDEKKYRCVARNTVGAAISPPSMVRSKYLDDFDASD 122


>Z81104-2|CAB70254.1|  233|Caenorhabditis elegans Hypothetical
           protein M199.4 protein.
          Length = 233

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 483 QHEHERGDCEPRHTNTGRETGQQGPGASQ 569
           +H ++  DCEP     GRE G++GP  +Q
Sbjct: 19  RHHYDYYDCEPERGPRGRE-GREGPRGAQ 46


>Z81526-7|CAB04266.2|  330|Caenorhabditis elegans Hypothetical
           protein F33H2.8 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -2

Query: 405 IAGLHDRVGNFLFKSIFDIDFGGCFL*YTESDNHG 301
           +A  H+R G       FD  F GC L Y  +  +G
Sbjct: 118 LANSHNRTGELFLVRSFDFLFAGCILFYYSTRQNG 152


>U51997-6|AAG24064.1|  159|Caenorhabditis elegans Hypothetical
           protein F19G12.1 protein.
          Length = 159

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -1

Query: 559 PGPCCPVSRPVFVWRGSQSPRSCSCWTEY 473
           P PCC V    +  RG + P+  SC   Y
Sbjct: 91  PRPCCAVCLDSYASRGPKKPKVFSCLHTY 119


>AF016662-5|AAB66059.2|  116|Caenorhabditis elegans Hypothetical
           protein C33C12.7 protein.
          Length = 116

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -2

Query: 492 VHVGLSTGASLPD-DEGEVTLAVELPADDVIAGLHDRV 382
           VH+ + T    P  D G +TL     A + IA  HDRV
Sbjct: 8   VHIAMETACGKPPKDMGIITLGDGYEASENIAAHHDRV 45


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,963,654
Number of Sequences: 27780
Number of extensions: 325947
Number of successful extensions: 930
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)