Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10n21r
(539 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi... 29 0.33
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 26 3.1
SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces po... 26 3.1
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 25 5.4
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom... 25 5.4
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po... 25 5.4
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-... 25 7.2
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 25 7.2
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 25 9.5
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr... 25 9.5
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 25 9.5
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c... 25 9.5
>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
Ran1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 470
Score = 29.5 bits (63), Expect = 0.33
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +2
Query: 92 HNPVLRLHYLNLSREFRSLARGGGDL--RNRFTLSMVSSLVSEVRN 223
HNP L L +SRE SL D + R TL +S+LVS +N
Sbjct: 255 HNPSTLLSILPISRELNSLLNRIFDRNPKTRITLPELSTLVSNCKN 300
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 26.2 bits (55), Expect = 3.1
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +2
Query: 194 VSSLVSEVRNGFRFAVSVRV-TVASTHSNNNVRLVVVVESLLQLTS 328
V SL ++ + R A V TVA +N+ RL VV++SLL + S
Sbjct: 1288 VDSLPTDANDRLREATVVLFGTVAQHLPSNDPRLAVVMDSLLSVLS 1333
>SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 235
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -1
Query: 98 DCVAKHPPHSLVTRY*FDAHCHIFLYRFFLLF 3
D + + L Y FD HC+ F F LL+
Sbjct: 119 DTILSSTDYQLEWNYCFDVHCNSFFPSFVLLY 150
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 25.4 bits (53), Expect = 5.4
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 14 KNGTKKYGSEHQINNE*QENVVDASPHNPVLRLHYLNLSR 133
KNGT K + QI N EN++ N ++ +L LS+
Sbjct: 478 KNGTSKTLVKPQITNSCLENMLSLVNKNSCIKRLHLKLSK 517
>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 605
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -2
Query: 331 ETGELKEALDDDNKPHVIVAVRGSYSYTNTDGKPETI 221
ETG E D++ V+V + + DGKP I
Sbjct: 85 ETGTYPEKDDENTNLQVVVDTKAQLNVNVNDGKPNDI 121
>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 374
Score = 25.4 bits (53), Expect = 5.4
Identities = 13/50 (26%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +2
Query: 179 FTLSMVSSLVSEVRNGFRFAVSVRVTVASTHSNNNVRLVVVVESLL-QLT 325
F+ ++ L + +G +AVS++ + ++ N+ +L ++ SLL Q+T
Sbjct: 247 FSAEFLNGLTDHMDSGIDYAVSLQKLIDASMDKNSQKLARLIFSLLYQIT 296
>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
L-lysine forming] |Schizosaccharomyces pombe|chr
1|||Manual
Length = 368
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -2
Query: 319 LKEALDDDNKPHVIVAVRGSYSYTNTDGKPETITYFADETG 197
LKE ++DN P ++ ++ Y N +G E ++ F G
Sbjct: 76 LKELPENDNSPLKHTHIQFAHCYKNQEGWREVLSRFPAGNG 116
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/52 (23%), Positives = 23/52 (44%)
Frame = -2
Query: 376 AYNYNFETSNGIVRSETGELKEALDDDNKPHVIVAVRGSYSYTNTDGKPETI 221
A N + ++ +++++D +PHV+VA G + ETI
Sbjct: 97 ALGANLNLKHALIVGGMDMIRQSIDLSKRPHVVVATPGRLADLIRSNGEETI 148
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 213 SLTRLDTMLRVNLFLRSPPPRAKLLNS 133
SL+ L LR + +R PP +K++NS
Sbjct: 685 SLSPLSYRLRKSKHIRESPPSSKVINS 711
>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 382
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/31 (29%), Positives = 15/31 (48%)
Frame = -1
Query: 527 IGYQQERTKTIKNEIDHRCSSRPCGYRHRCP 435
+GY+ + + RC+ PC YR+ P
Sbjct: 235 VGYKPKCNRIFFTRNGRRCAELPCTYRNLYP 265
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 24.6 bits (51), Expect = 9.5
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +2
Query: 278 NNVRLVV---VVESLLQLTSFATHDAVGSLEIVVVSSIGAGVEFRPNDLRVVL 427
+N+ LVV + S Q+TS ++ SLE ++ +GA R +D +V L
Sbjct: 956 SNIALVVDELINLSSKQITSHPQSLSIASLEASLIFVLGASSIIREDDSKVTL 1008
>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 594
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 246 TLTANLKPLRTSLTRLDTMLRVNLFLRSPPPRAKLLNSL 130
TLTA+L+ T L+T L+ + PP L++S+
Sbjct: 139 TLTASLERATQPPTNLETALQFRVIRTIPPNSLDLMHSV 177
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,131,985
Number of Sequences: 5004
Number of extensions: 39827
Number of successful extensions: 123
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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