Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10n20r
         (754 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C)             352   1e-97
At2g31610.1 68415.m03862 40S ribosomal protein S3 (RPS3A)             350   7e-97
At3g53870.1 68416.m05951 40S ribosomal protein S3 (RPS3B) riboso...   347   6e-96
At3g06190.2 68416.m00712 speckle-type POZ protein-related simila...    32   0.47 
At3g06190.1 68416.m00711 speckle-type POZ protein-related simila...    32   0.47 
At3g48010.1 68416.m05234 cyclic nucleotide-regulated ion channel...    31   0.82 
At2g25150.1 68415.m03008 transferase family protein similar to 1...    31   0.82 
At4g30360.1 68417.m04314 cyclic nucleotide-regulated ion channel...    30   1.4  
At5g18570.1 68418.m02195 GTP1/OBG family protein similar to SP|P...    28   5.8  
At5g14870.1 68418.m01744 cyclic nucleotide-regulated ion channel...    28   5.8  
At1g09830.1 68414.m01105 phosphoribosylamine--glycine ligase (PU...    28   7.7  

>At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C)
          Length = 248

 Score =  352 bits (866), Expect = 1e-97
 Identities = 168/222 (75%), Positives = 189/222 (85%)
 Frame = -3

Query: 713 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 534
           ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 5   ISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 64

Query: 533 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 354
           RIRELTS+VQKRF  P+ SVELYAEKVA RGLCAIAQAESLRYKL+GGLAVRRACYGVLR
Sbjct: 65  RIRELTSLVQKRFKFPQDSVELYAEKVANRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124

Query: 353 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 174
           F+MESGA+GCEV+VSGKLR  RAKSMKF DG M+ SG P  +Y++ A RHVLLRQGVLG+
Sbjct: 125 FVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQGVLGL 184

Query: 173 KVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTSEV 48
           KVKIML WD +GK GP  P PD +++  PK++ V + P   V
Sbjct: 185 KVKIMLDWDPKGKQGPMTPLPDVVIIHTPKEDDVYIAPAQVV 226


>At2g31610.1 68415.m03862 40S ribosomal protein S3 (RPS3A)
          Length = 250

 Score =  350 bits (860), Expect = 7e-97
 Identities = 169/218 (77%), Positives = 186/218 (85%)
 Frame = -3

Query: 713 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 534
           ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 5   ISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 64

Query: 533 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 354
           RIRELTS+VQKRF  P  SVELYAEKV  RGLCAIAQAESLRYKL+GGLAVRRACYGVLR
Sbjct: 65  RIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124

Query: 353 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 174
           F+MESGA+GCEV+VSGKLR  RAKSMKF DG M+ SG P  +Y++ A RHVLLRQGVLGI
Sbjct: 125 FVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQGVLGI 184

Query: 173 KVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP 60
           KVKIML WD  GK+GPK P PD +++  PKD+ V   P
Sbjct: 185 KVKIMLDWDPTGKSGPKTPLPDVVIIHAPKDDVVYSAP 222


>At3g53870.1 68416.m05951 40S ribosomal protein S3 (RPS3B) ribosomal
           protein S3a - Xenopus laevis, PIR:R3XL3A
          Length = 249

 Score =  347 bits (852), Expect = 6e-96
 Identities = 166/218 (76%), Positives = 186/218 (85%)
 Frame = -3

Query: 713 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 534
           ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 5   ISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 64

Query: 533 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 354
           RIRELTS+VQKRF  P  SVELYAEKV  RGLCAIAQAESLRYKL+GGLAVRRACYGVLR
Sbjct: 65  RIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124

Query: 353 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 174
           F+MESGA+GCEV+VSGKLR  RAKSMKF DG M+ SG P  +Y+++A RHVLLRQGVLGI
Sbjct: 125 FVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDSAVRHVLLRQGVLGI 184

Query: 173 KVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP 60
           KVK+ML WD +G +GPK P PD +++  PK+E     P
Sbjct: 185 KVKVMLDWDPKGISGPKTPLPDVVIIHSPKEEEAIYAP 222


>At3g06190.2 68416.m00712 speckle-type POZ protein-related similar
           to SPOP (novel nuclear speckle-type protein)
           (SP:O43791)   [Homo sapiens]; contains Pfam PF00651 :
           BTB/POZ domain; contains Pfam PF00917: MATH domain
          Length = 295

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +3

Query: 516 SQLTDSASFLSEHTLCPGGHNNDLRADGSD 605
           S+L +  + LSEH+L   GH  +L ADG D
Sbjct: 255 SELLEYVARLSEHSLTSSGHRKELFADGCD 284


>At3g06190.1 68416.m00711 speckle-type POZ protein-related similar
           to SPOP (novel nuclear speckle-type protein)
           (SP:O43791)   [Homo sapiens]; contains Pfam PF00651 :
           BTB/POZ domain; contains Pfam PF00917: MATH domain
          Length = 406

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +3

Query: 516 SQLTDSASFLSEHTLCPGGHNNDLRADGSD 605
           S+L +  + LSEH+L   GH  +L ADG D
Sbjct: 366 SELLEYVARLSEHSLTSSGHRKELFADGCD 395


>At3g48010.1 68416.m05234 cyclic nucleotide-regulated ion channel,
           putative (CNGC16) similar to cyclic nucleotide and
           calmodulin-regulated ion channel (cngc6) GI:4581207 from
           [Arabidopsis thaliana]
          Length = 705

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 19/48 (39%), Positives = 24/48 (50%)
 Frame = +3

Query: 417 FGLGDSAKTTSSHLFSIQFYRLLWNVESLLYYGSQLTDSASFLSEHTL 560
           FG   +   TSS  F   FY L W + +L  YG  L  +AS LS  T+
Sbjct: 309 FGDAFTNDVTSSPFFDKYFYCLWWGLRNLSSYGQSL--AASTLSSETI 354


>At2g25150.1 68415.m03008 transferase family protein similar to
           10-deacetylbaccatin III-10-O-acetyl transferase
           [gi:6746554], 2-debenzoyl-7,13-diacetylbaccatin
           III-2-O-benzoyl transferase [gi:11559716] from Taxus
           cuspidata; contains Pfam transferase family domain
           PF00248; contains EST gb:R65039
          Length = 461

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 585 LRADGSDPDFHAGVAVLGQLPSEELIEFRLENSISNK 695
           L+   SDP    GV V+ +LP + ++EF+ E +   K
Sbjct: 418 LKPSKSDPSMEGGVKVIMKLPRDAMVEFKREMATMKK 454


>At4g30360.1 68417.m04314 cyclic nucleotide-regulated ion channel,
           putative (CNGC17) similar to cyclic nucleotide and
           calmodulin-regulated ion channel cngc5 GI:4581205 from
           [Arabidopsis thaliana]
          Length = 720

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +3

Query: 417 FGLGDSAKTTSSHLFSIQFYRLLWNVESLLYYGSQLTDSASFLSEHT 557
           FG   +    SS  F   FY L W ++ L  YG  L+ +  F+ E T
Sbjct: 333 FGNAITKNVVSSQFFERYFYCLWWGLQQLSSYGQNLS-TTMFMGETT 378


>At5g18570.1 68418.m02195 GTP1/OBG family protein similar to
           SP|P20964 Spo0B-associated GTP-binding protein {Bacillus
           subtilis}; contains Pfam profile PF01018: GTP1/OBG
           family
          Length = 681

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
 Frame = -3

Query: 380 RRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDG--LMIHSGDPCNDYVNTATR 207
           RRA         +SG R   VV +G  R  +  + +++D      H  D C   VN + +
Sbjct: 578 RRAAINEFEVFRDSGTRAWHVVGAGLQRFVQMTNWRYMDSDKRFQHVLDACG--VNKSLK 635

Query: 206 HVLLRQGVLGIKVKIMLPWDQQGKNGPKKP 117
           ++ +++G   I  ++ L W     NG  +P
Sbjct: 636 NMGVKEGDTVIVGEMELIW-HDSANGSSRP 664


>At5g14870.1 68418.m01744 cyclic nucleotide-regulated ion channel,
           putative (CNGC18) similar to cyclic nucleotide and
           calmodulin-regulated ion channel (cngc6) GI:4581207 from
           [Arabidopsis thaliana]
          Length = 706

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
 Frame = +3

Query: 357 ENTIASTTYSETSDKLVS*RFGLGDSAKTT---SSHLFSIQFYRLLWNVESLLYYGSQLT 527
           +N     ++ + +    + +FG+   A TT   ++   S   Y L W + +L  YG  +T
Sbjct: 278 QNVTQVLSHCDATSSTTNFKFGMFAEAFTTQVATTDFVSKYLYCLWWGLRNLSSYGQNIT 337

Query: 528 DSASFLSEHTLC 563
            S  +L E   C
Sbjct: 338 TSV-YLGETLFC 348


>At1g09830.1 68414.m01105 phosphoribosylamine--glycine ligase (PUR2)
           Identical to phosphoribosylamine--glycine ligase,
           chloroplast [precursor] SP:P52420 from [Arabidopsis
           thaliana]
          Length = 532

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 338 GARGCEVVVSGKLRGQRAKSMKFVDG 261
           G+ GC+VVV   L G+ A     VDG
Sbjct: 273 GSAGCQVVVEEFLEGEEASFFALVDG 298


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,537,013
Number of Sequences: 28952
Number of extensions: 356379
Number of successful extensions: 1014
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)