Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10n19r
(736 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb... 217 1e-57
SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb... 208 5e-55
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 29 0.69
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 27 2.8
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos... 27 2.8
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 27 3.7
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces... 26 4.8
SPCC5E4.10c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 4.8
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 6.4
>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 217 bits (530), Expect = 1e-57
Identities = 108/222 (48%), Positives = 144/222 (64%), Gaps = 7/222 (3%)
Frame = -2
Query: 735 SSCTVYGEPEH----LPITETHPTGSITNVYGRTKYFIEEMLKDLSAADDKWNIISLRYF 568
SS TVYG+ +PI E+ P TN YG+TKY IE ++KDL +D+ W LRYF
Sbjct: 128 SSATVYGDATRFDNMIPIPESCPNDP-TNPYGKTKYAIENIIKDLHTSDNTWRGAILRYF 186
Query: 567 NPVGAHPSGLIGEDPTKEFTNLMPFLAQVALGKKPVLTVFGTDYNTPDGTGIRDYIHVMD 388
NP+GAHPSGL+GEDP NL+PFLAQVA+G++ L VFG DY++ DGT IRDYIHV+D
Sbjct: 187 NPIGAHPSGLLGEDPLGIPNNLLPFLAQVAIGRREKLLVFGDDYDSHDGTPIRDYIHVVD 246
Query: 387 LASGHVAALNLLSQTHIRLKVY---NLGTGKGVSVKELVNVFERVTKAKVPLKYVDRRLG 217
LA GH+AALN L++ + +Y NLGTGKG SV ++ + F + +P + V RR G
Sbjct: 247 LAKGHIAALNYLNKINNSEGMYREWNLGTGKGSSVFDIYHAFCKEVGKDLPYEVVGRRTG 306
Query: 216 DISAMWADTSLAKEELGWSTQLTIEEMCTDFWRWQTMNPDGY 91
D+ + A + A EL W +L+I + C D W+W NP G+
Sbjct: 307 DVLNLTASPNRANSELKWKAELSITDACRDLWKWTIENPFGF 348
>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 208 bits (509), Expect = 5e-55
Identities = 106/226 (46%), Positives = 139/226 (61%), Gaps = 4/226 (1%)
Frame = -2
Query: 735 SSCTVYGEPEH----LPITETHPTGSITNVYGRTKYFIEEMLKDLSAADDKWNIISLRYF 568
SS TVYG+P +PI E+ P T+ YGRTK FIE +++D + + N LRYF
Sbjct: 129 SSATVYGDPTRPGGTIPIPESCPREG-TSPYGRTKLFIENIIEDETKVNKSLNAALLRYF 187
Query: 567 NPVGAHPSGLIGEDPTKEFTNLMPFLAQVALGKKPVLTVFGTDYNTPDGTGIRDYIHVMD 388
NP GAHPSG +GEDP NL+P++AQVA+G+ L VFG DY T DGT IRDYIHV D
Sbjct: 188 NPGGAHPSGELGEDPLGIPNNLLPYIAQVAVGRLDHLNVFGDDYPTSDGTPIRDYIHVCD 247
Query: 387 LASGHVAALNLLSQTHIRLKVYNLGTGKGVSVKELVNVFERVTKAKVPLKYVDRRLGDIS 208
LA HVAAL+ L Q + + +NLG+G G +V +++N F + +P K RR GD+
Sbjct: 248 LAEAHVAALDYLRQHFVSCRPWNLGSGTGSTVFQVLNAFSKAVGRDLPYKVTPRRAGDVV 307
Query: 207 AMWADTSLAKEELGWSTQLTIEEMCTDFWRWQTMNPDGYPKKTKKT 70
+ A+ + A EEL W T +I E+C D WRWQ P G+ KT
Sbjct: 308 NLTANPTRANEELKWKTSRSIYEICVDTWRWQQKYPYGFDLTHTKT 353
>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 580
Score = 29.1 bits (62), Expect = 0.69
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = -2
Query: 240 KYVDRRLGDISAMWADTSLAKEELGWSTQLTIEEMCTDFWRW-QTMNP--DGYPKKTKKT 70
+Y + + + D S KEE+G+ + E F RW ++ P DG P+K K+T
Sbjct: 23 EYTSKEVKHPEDVKVDASYEKEEVGYGELEVVPERGNLFQRWYRSFLPPEDGKPQKLKRT 82
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 27.1 bits (57), Expect = 2.8
Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -1
Query: 322 QSGYRQRSFSQRISERIRK--SHKSQSATQVRRSKTWRHQRH 203
Q G R + +S R + S +S + ++RR +W+H ++
Sbjct: 31 QKGARYNRYVDDVSSRRDRHDSFRSHESNKIRRDNSWKHDKY 72
>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 27.1 bits (57), Expect = 2.8
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -2
Query: 618 DLSAADDKWNIISLRYFNPVGAHPSGLIGED 526
D A+D++ + R+F P+ PS + ED
Sbjct: 81 DPKLAEDRYRSSAARHFEPISIPPSAITSED 111
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 542 G*SAKTLLRSSPTSCHSSRKLLSARNLC 459
G +++ LR+ PT S KLL A NLC
Sbjct: 279 GIASRISLRTIPTQSCFSEKLLKAANLC 306
>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 564
Score = 26.2 bits (55), Expect = 4.8
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +2
Query: 89 GYPSGFIVCHRQKSVHISSIVN*VDHPSSSLASEVSAHMALMSPSLRSTYLSGTLAFVTL 268
GYP + H + S VN PS+S + + + + SPS + +GT + T+
Sbjct: 478 GYPL-IMYPHSKMSGFTLPTVNRTVMPSTSATATTTVYTSYYSPSYSARSFTGTGSIFTI 536
Query: 269 SNT 277
S++
Sbjct: 537 SSS 539
>SPCC5E4.10c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 101
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -1
Query: 283 SERIRKSHKSQSATQVRRSKTWRHQRH 203
S+R R+S K +S TQ++ S +H+RH
Sbjct: 57 SDRRRQSRKKKS-TQIQASDEMKHRRH 82
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 6.4
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +2
Query: 170 SSSLASEVSAHMALMSPSLRSTYLSGTLAFVTLSNTFTNSLTETPL 307
SSSLAS +L S S S+ L+ + T S T T+S T + L
Sbjct: 136 SSSLASSSITSSSLASSSTTSSSLASSSTNSTTSATPTSSATSSSL 181
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,147,843
Number of Sequences: 5004
Number of extensions: 69519
Number of successful extensions: 220
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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