Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10n19r
         (736 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30795| Best HMM Match : Epimerase (HMM E-Value=0)                  261   4e-70
SB_15042| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_3064| Best HMM Match : Adhesin_P1 (HMM E-Value=2.3)                 31   0.73 
SB_15559| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_23553| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_31378| Best HMM Match : Herpes_UL55 (HMM E-Value=4.5)               28   9.0  

>SB_30795| Best HMM Match : Epimerase (HMM E-Value=0)
          Length = 869

 Score =  261 bits (640), Expect = 4e-70
 Identities = 121/201 (60%), Positives = 150/201 (74%)
 Frame = -2

Query: 735 SSCTVYGEPEHLPITETHPTGSITNVYGRTKYFIEEMLKDLSAADDKWNIISLRYFNPVG 556
           SS TVYG+P+ LPITE+HP G  TN YG+TKYFIEEMLKDL  A+ ++NI+SLRYFNPVG
Sbjct: 161 SSATVYGDPQFLPITESHPAGGCTNPYGKTKYFIEEMLKDLCYAEKEFNIVSLRYFNPVG 220

Query: 555 AHPSGLIGEDPTKEFTNLMPFLAQVALGKKPVLTVFGTDYNTPDGTGIRDYIHVMDLASG 376
           AH SG IGEDP     NL+P++ QVA+GK+P L VFG DY+TPDGTG+RDYIHV+DLA G
Sbjct: 221 AHKSGKIGEDPKDIPNNLLPYITQVAVGKRPHLNVFGKDYDTPDGTGVRDYIHVVDLAMG 280

Query: 375 HVAALNLLSQTHIRLKVYNLGTGKGVSVKELVNVFERVTKAKVPLKYVDRRLGDISAMWA 196
           HVAAL  + +     KVYNLGTG+G SV E+V   E+ +  ++P K+ DRR GDI++ +A
Sbjct: 281 HVAALKKVEE-KCGWKVYNLGTGRGYSVLEMVKAVEKASGKEIPYKFTDRRAGDIASCYA 339

Query: 195 DTSLAKEELGWSTQLTIEEMC 133
           D SLA +EL W       EMC
Sbjct: 340 DPSLAAKELNWKATRAQNEMC 360


>SB_15042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 45

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 21/44 (47%), Positives = 28/44 (63%)
 Frame = -2

Query: 378 GHVAALNLLSQTHIRLKVYNLGTGKGVSVKELVNVFERVTKAKV 247
           GHVAAL  + +     KVYNLGTG+G SV E+V   E+ +  +V
Sbjct: 2   GHVAALKKVEEK-CGWKVYNLGTGRGYSVLEMVKAVEKASGKEV 44


>SB_3064| Best HMM Match : Adhesin_P1 (HMM E-Value=2.3)
          Length = 353

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 13/56 (23%), Positives = 27/56 (48%)
 Frame = -1

Query: 349 PNPYQTKGLQSGYRQRSFSQRISERIRKSHKSQSATQVRRSKTWRHQRHVGGHLTG 182
           PN Y T      Y  ++ +Q   + +  SH   ++ ++ ++K  RH  +   ++TG
Sbjct: 30  PNTYSTTSTNGSYHTQAKAQSHDKIVAASHTQTTSARLTQTKAARHDCNQSSNITG 85


>SB_15559| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = -1

Query: 508 QPHAIPRASCSRQETCAHRFRNRLQHSRWNWYSRLH 401
           + HAIP   C       H   +   H  W+WY+  H
Sbjct: 125 EKHAIPLELCLSSNVQCHTVSSYDDHHMWHWYNTNH 160


>SB_23553| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 757

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +1

Query: 394 DVYVISNTSSIGSVVVGSENGEHRFLAESNLREEWHEVGELLSRVFADQP*RMCTDR--V 567
           D+YVI +  S  S+ +      H  +    LR+    +     ++    P  +C  R  V
Sbjct: 416 DIYVIVDNQSGQSITITGIRLWHFVIMSGRLRKRLR-IESFWFKLRRHTPCCVCNLRFDV 474

Query: 568 EIPEGDNVPFIIS 606
           EIPE DN+ F +S
Sbjct: 475 EIPEDDNIQFAVS 487


>SB_31378| Best HMM Match : Herpes_UL55 (HMM E-Value=4.5)
          Length = 690

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 469 LAESNLREEWHEVGELLSRVFADQP 543
           + ++ LR EWH+    L RV +D+P
Sbjct: 529 IRQTLLRSEWHQTNPFLLRVASDKP 553


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,815,750
Number of Sequences: 59808
Number of extensions: 534510
Number of successful extensions: 1982
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1981
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)