Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10n19r
         (736 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    23   3.0  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    23   3.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.9  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    21   9.1  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    21   9.1  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   9.1  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           21   9.1  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   9.1  

>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 18/78 (23%), Positives = 33/78 (42%)
 Frame = -1

Query: 484 SCSRQETCAHRFRNRLQHSRWNWYSRLHTRHGFG*RACSRVKFTQPNPYQTKGLQSGYRQ 305
           SCSR     ++ ++R      N   +L        +  SR +  + N Y+ +     YR+
Sbjct: 3   SCSRDRNREYKEKDRRYEKLHNEKEKL-LEERTSRKRYSRSREREQNSYKNEKEYRKYRE 61

Query: 304 RSFSQRISERIRKSHKSQ 251
           RS  +   +R R+  K +
Sbjct: 62  RSKERSRDKRERERSKER 79


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 18/78 (23%), Positives = 33/78 (42%)
 Frame = -1

Query: 484 SCSRQETCAHRFRNRLQHSRWNWYSRLHTRHGFG*RACSRVKFTQPNPYQTKGLQSGYRQ 305
           SCSR     ++ ++R      N   +L        +  SR +  + N Y+ +     YR+
Sbjct: 3   SCSRDRNREYKEKDRRYEKLHNEKEKL-LEERTSRKRYSRSREREQNSYKNEKEYRKYRE 61

Query: 304 RSFSQRISERIRKSHKSQ 251
           RS  +   +R R+  K +
Sbjct: 62  RSKERSRDKRERERSKER 79


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 515  SSPTSCHSSRKLLSARNLCSPFSEPTTTL 429
            SS +S +SS    S+ + C+P  +PT  L
Sbjct: 953  SSSSSFYSSFLYKSSESSCNPDQKPTEYL 981


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 405 YIHVMDLASGHVAALNLLSQTHIRLKVYNLG 313
           Y HV + +S  +  L+ +  TH    VY LG
Sbjct: 272 YPHVPEYSSSIIMELHNIEGTHYVKIVYYLG 302


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 405 YIHVMDLASGHVAALNLLSQTHIRLKVYNLG 313
           Y HV + +S  +  L+ +  TH    VY LG
Sbjct: 287 YPHVPEYSSSIIMELHNIEGTHYVKIVYYLG 317


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 157 SINYRRDVYGFLAMAD 110
           +INYR  + GFL+  D
Sbjct: 155 TINYRLGILGFLSTED 170


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 157 SINYRRDVYGFLAMAD 110
           +INYR  + GFL+  D
Sbjct: 26  TINYRLGILGFLSTED 41


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 157 SINYRRDVYGFLAMAD 110
           +INYR  + GFL+  D
Sbjct: 155 TINYRLGILGFLSTED 170


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,763
Number of Sequences: 438
Number of extensions: 5193
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)