Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10n19f
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb...   139   3e-34
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...   128   5e-31
SPBC2A9.02 |||NAD dependent epimerase/dehydratase family protein...    42   9e-05
SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase family|...    33   0.043
SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar...    30   0.23 
SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta 5-->4-i...    28   0.93 
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    27   1.6  
SPBC1773.04 |||flavonol reductase/cinnamoyl-CoA reductase family...    27   1.6  
SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family...    27   2.1  
SPCC1840.09 |||NAD dependent epimerase/dehydratase family protei...    27   2.8  
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce...    26   3.7  
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb...    26   5.0  
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom...    25   8.7  

>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score =  139 bits (336), Expect = 3e-34
 Identities = 73/158 (46%), Positives = 98/158 (62%), Gaps = 4/158 (2%)
 Frame = +3

Query: 147 ILVTGGAGYIGSHCVVTLLEAGHEVIAIDNFTNSVEDEDGSPALQRAEKITGKKITFYKA 326
           +LVTGGAGYIGSH  V LLE G++V+ +DN  NS  +     A+ R EK+TGKK+ F++ 
Sbjct: 9   VLVTGGAGYIGSHTCVVLLEKGYDVVIVDNLCNSRVE-----AVHRIEKLTGKKVIFHQV 63

Query: 327 DLLDKPQINAIFDKHPVDCVIHFAALKAVGESMXXXXXXXXXXXXGMLNLLEIMRSHNCY 506
           DLLD+P ++ +F    +  VIHFA LKAVGES+            G +NL+E M+ +N  
Sbjct: 64  DLLDEPALDKVFANQNISAVIHFAGLKAVGESVQVPLSYYKNNISGTINLIECMKKYNVR 123

Query: 507 QMVFSSSCTVYGEPEH----LPITETHPTGSITNVYGR 608
             VFSSS TVYG+P      +PI E+ P    T+ YGR
Sbjct: 124 DFVFSSSATVYGDPTRPGGTIPIPESCPREG-TSPYGR 160


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score =  128 bits (310), Expect = 5e-31
 Identities = 75/158 (47%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
 Frame = +3

Query: 147 ILVTGGAGYIGSHCVVTLLEAGHEVIAIDNFTNSVEDEDGSPALQRAEKITGKKITFYKA 326
           ILVTGGAGYIGSH V+ L+  G++VI +DN  NS  D     A+ R E I  K I F+K 
Sbjct: 8   ILVTGGAGYIGSHTVIELINHGYKVIIVDNLCNSCYD-----AVARVEFIVRKSIKFFKL 62

Query: 327 DLLDKPQINAIFDKHPVDCVIHFAALKAVGESMXXXXXXXXXXXXGMLNLLEIMRSHNCY 506
           DL DK  +  IFD   +  VIHFAALKAVGESM            G + LL +MR H   
Sbjct: 63  DLRDKEGLAQIFDTFKIKGVIHFAALKAVGESMKLPLEYYDNNICGTITLLNVMREHRVK 122

Query: 507 QMVFSSSCTVYGEPEH----LPITETHPTGSITNVYGR 608
            +VFSSS TVYG+       +PI E+ P    TN YG+
Sbjct: 123 TVVFSSSATVYGDATRFDNMIPIPESCPNDP-TNPYGK 159


>SPBC2A9.02 |||NAD dependent epimerase/dehydratase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 41.5 bits (93), Expect = 9e-05
 Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
 Frame = +3

Query: 147 ILVTGGAGYIGSHCVVTLLEAGHEVIAI---DNFTNSVEDEDGSPALQRAEKITGKKITF 317
           I VTG AG+IGS  V  LLEAGHEV+ +   +     +    G+P +   E +   K   
Sbjct: 3   IFVTGAAGFIGSEIVRQLLEAGHEVVGLVRSEENAAKLRAAGGTPYIGTLEDLDTLKKGV 62

Query: 318 YKADLLDKPQINAIFDKHPVDCVIHFAALKAVGE 419
            + D +        F  +   C +    ++A+GE
Sbjct: 63  AQCDGVIHTAFVHDFSIYQEACKLDARVIEAIGE 96


>SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 336

 Score = 32.7 bits (71), Expect = 0.043
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +3

Query: 141 KNILVTGGAGYIGSHCVVTLLEAGHEV 221
           K +LVTG  G+IG+H    LL+AG+ V
Sbjct: 4   KLVLVTGVTGFIGAHVAEQLLQAGYRV 30


>SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 236

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
 Frame = +3

Query: 141 KNILVTGGAGYIGSHCVVTLLEAGHEVIAIDNFTNSVEDEDGSPALQRAEKITGKKITFY 320
           + +L+TGG+  +G        + GH+   +      +++      LQ      G++ T  
Sbjct: 2   RKVLITGGSSGLGKRIAQIWSQKGHQCHIVGRNEFHLKE-----TLQSLSVAKGQQHTLT 56

Query: 321 KADL-LDKPQINAIFDKHPVDCVIHFAAL 404
            AD+  D   + +IF+   +D V+H A +
Sbjct: 57  IADVQSDMKNLKSIFESVEIDTVVHAAGV 85


>SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta
           5-->4-isomerase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 340

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 31/147 (21%), Positives = 60/147 (40%), Gaps = 2/147 (1%)
 Frame = +3

Query: 144 NILVTGGAGYIGSHCVVTLLEAGH-EVIAIDNFTNSVEDEDGSPALQRAEKITGKKITFY 320
           N ++  G+G++G H +  L E  +  + A D F N           +   ++ G+  T Y
Sbjct: 4   NSVLVIGSGFLGGHIIRQLCERENLRIAAFDLFENE----------KLLHELHGQ-FTMY 52

Query: 321 KADLLDKPQINAIFDKHPVDCVIHFAALKAVGESMXXXXXXXXXXXXGMLNLLEIMRSHN 500
             DL  +  I  +F++     VIH A+                    G  N+++  +  N
Sbjct: 53  TGDLTKQGDIERVFEEFHPRVVIHTAS----PVHNLARDIYFEVNVDGTANIIKACQKFN 108

Query: 501 CYQMVFSSSC-TVYGEPEHLPITETHP 578
              +V++SS   V+   + + + E+ P
Sbjct: 109 VDALVYTSSAGVVFNGADLINVDESQP 135


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 213 HEVIAIDNFTNSVEDEDGSPALQRAEKITGKKITFY 320
           HE+  +D+++NS   E  S  +Q   K  G   T+Y
Sbjct: 55  HEMRVVDDYSNSKNAERHSGEIQAYAKFAGSTWTYY 90


>SPBC1773.04 |||flavonol reductase/cinnamoyl-CoA reductase
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 147 ILVTGGAGYIGSHCVVTLLEAGHEVIAIDNFTNSVE 254
           +L+TG  G++ SH    LL  G+ V     F   ++
Sbjct: 5   VLITGITGFVASHSAEALLSQGYRVRGTYRFQEKLD 40


>SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 147 ILVTGGAGYIGSHCVVTLLEAGHEVIAIDN 236
           I++TGG+G +G   +   L+ G  V ++D+
Sbjct: 38  IVITGGSGILGHAIIQEALDRGFSVASLDS 67


>SPCC1840.09 |||NAD dependent epimerase/dehydratase family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 276

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +3

Query: 147 ILVTGGAGYIGSHCVVTLLEAGHEVIAI 230
           I+V GG+G++G +     +  G+EV+++
Sbjct: 3   IVVLGGSGFLGHNICKLAIAKGYEVVSV 30


>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 357

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 392 FCGTQSSWGIDAATLIILPEQPAWDAQLIGD 484
           F G  + WG    TL  L E PAW  + +G+
Sbjct: 90  FRGIVNEWGRSERTLDSLDEPPAWFRREMGE 120


>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = +3

Query: 138 FKNI-LVTGGAGYIGSHCVVTLLEAG--HEVIAIDNFTNSVEDE 260
           FK+I +V  GAG +GS    TLL +G   E++ ID      E E
Sbjct: 18  FKSIKIVIVGAGNVGSTTAFTLLLSGLAAEIVIIDLNKKKAEGE 61


>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/12 (75%), Positives = 12/12 (100%)
 Frame = +3

Query: 150 LVTGGAGYIGSH 185
           L+TGGAG+IGS+
Sbjct: 13  LITGGAGFIGSN 24


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,355,351
Number of Sequences: 5004
Number of extensions: 44791
Number of successful extensions: 139
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)