Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10n19f
         (608 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30795| Best HMM Match : Epimerase (HMM E-Value=0)                  169   2e-42
SB_45640| Best HMM Match : Epimerase (HMM E-Value=9.4e-38)             50   1e-06
SB_52454| Best HMM Match : 3HCDH_N (HMM E-Value=1.3)                   34   0.078
SB_32433| Best HMM Match : NAD_binding_4 (HMM E-Value=0.037)           33   0.18 
SB_42322| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.24 
SB_36790| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.97 
SB_16975| Best HMM Match : MFS_1 (HMM E-Value=2.6e-24)                 30   1.3  
SB_45592| Best HMM Match : Epimerase (HMM E-Value=1.4e-19)             29   2.2  
SB_564| Best HMM Match : TrkA_N (HMM E-Value=0.05)                     29   2.2  
SB_32568| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_17383| Best HMM Match : LytTR (HMM E-Value=2.4)                     28   6.8  
SB_2673| Best HMM Match : UPF0154 (HMM E-Value=1.9)                    27   9.0  

>SB_30795| Best HMM Match : Epimerase (HMM E-Value=0)
          Length = 869

 Score =  169 bits (411), Expect = 2e-42
 Identities = 81/156 (51%), Positives = 107/156 (68%)
 Frame = +3

Query: 141 KNILVTGGAGYIGSHCVVTLLEAGHEVIAIDNFTNSVEDEDGSPALQRAEKITGKKITFY 320
           K +LVTGGAGYIGSHCVV +L AG+EV+ IDN +NS      +  ++R E+I+GKK+ F+
Sbjct: 39  KKVLVTGGAGYIGSHCVVEILNAGYEVVIIDNLSNS-----DAECVRRVEEISGKKVPFF 93

Query: 321 KADLLDKPQINAIFDKHPVDCVIHFAALKAVGESMXXXXXXXXXXXXGMLNLLEIMRSHN 500
             DLL+K  ++ IF KH  + V+HFA LKAVGES+            G L+LLE M+ H 
Sbjct: 94  IEDLLNKEALDDIFKKHKFNGVLHFAGLKAVGESVQIPLRYYHNNLTGTLHLLECMKKHG 153

Query: 501 CYQMVFSSSCTVYGEPEHLPITETHPTGSITNVYGR 608
            + +VFSSS TVYG+P+ LPITE+HP G  TN YG+
Sbjct: 154 VHNLVFSSSATVYGDPQFLPITESHPAGGCTNPYGK 189


>SB_45640| Best HMM Match : Epimerase (HMM E-Value=9.4e-38)
          Length = 451

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 41/158 (25%), Positives = 71/158 (44%)
 Frame = +3

Query: 135 RFKNILVTGGAGYIGSHCVVTLLEAGHEVIAIDNFTNSVEDEDGSPALQRAEKITGKKIT 314
           ++ ++LVTGGAGY+GS  V  LL+ G++V   D F   +       +  R + I G    
Sbjct: 139 KYPHVLVTGGAGYLGSSLVPILLDQGYKVTVYDRFLWGISSLYPCASNPRLQIING---- 194

Query: 315 FYKADLLDKPQINAIFDKHPVDCVIHFAALKAVGESMXXXXXXXXXXXXGMLNLLEIMRS 494
               D+LD   ++    +   D VIH A++                   G  N+++ +  
Sbjct: 195 ----DILDVGHLSQCISE--CDAVIHLASIVGYPACEKDPQKATEVNEQGTRNVVDALLP 248

Query: 495 HNCYQMVFSSSCTVYGEPEHLPITETHPTGSITNVYGR 608
                +V++S+ + YG  E    TE+ P   +T +YG+
Sbjct: 249 GQ--PLVYASTGSCYGAIEDGLCTESTPISPLT-LYGK 283


>SB_52454| Best HMM Match : 3HCDH_N (HMM E-Value=1.3)
          Length = 114

 Score = 34.3 bits (75), Expect = 0.078
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = +3

Query: 141 KNILVTGGAGYIGSHCVVTLLEAGHEVIAID 233
           K ++VTGGAGY GS     L E G EV   D
Sbjct: 12  KKVVVTGGAGYFGSRLGYALSEKGAEVTLFD 42


>SB_32433| Best HMM Match : NAD_binding_4 (HMM E-Value=0.037)
          Length = 116

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
 Frame = +3

Query: 147 ILVTGGAGYIGSHCVVTLLEAGHEVIAIDNFTNSVEDEDG--SPALQRAEKITGKKITFY 320
           ILVTGG G +GSH +  L      + AI     S+       S      +++   KI + 
Sbjct: 2   ILVTGGTGLVGSHLLYELALKNLPIKAIYRTKESLATVKRVFSYFTTNVDELF-NKIQWI 60

Query: 321 KADLLDKPQINAIFDKHPVDCVIHFAAL 404
           +AD+ D P ++  F +  V  V H AAL
Sbjct: 61  QADITDVPSLDEAFKE--VTLVYHAAAL 86


>SB_42322| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 294

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 19/78 (24%), Positives = 29/78 (37%)
 Frame = +3

Query: 309 ITFYKADLLDKPQINAIFDKHPVDCVIHFAALKAVGESMXXXXXXXXXXXXGMLNLLEIM 488
           I   K D+ +   +  IF    +D V+HFAA   V  S             G   L+ + 
Sbjct: 50  INLDKGDICEANHLKYIFQAEQIDTVLHFAAQSHVDNSFWSSLDFTKTNVYGTHVLINVA 109

Query: 489 RSHNCYQMVFSSSCTVYG 542
                 + +  S+  VYG
Sbjct: 110 HEAKIKKFIHVSTDEVYG 127


>SB_36790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 57

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = +3

Query: 147 ILVTGGAGYIGSHCVVTLLEAGH 215
           I+VTGGAG+IGS+ V  L + G+
Sbjct: 5   IIVTGGAGFIGSNIVKALNDKGY 27


>SB_16975| Best HMM Match : MFS_1 (HMM E-Value=2.6e-24)
          Length = 1193

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +3

Query: 288 EKITGKKITFYKADLLDKPQINAIFDKHPV 377
           E+I G ++ FY ADL+ +  +NA+  + PV
Sbjct: 547 ERIKGIRVIFYMADLIPECIVNAVLYRRPV 576


>SB_45592| Best HMM Match : Epimerase (HMM E-Value=1.4e-19)
          Length = 672

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 147 ILVTGGAGYIGSHCVVTLLEAGHEVI 224
           +LVTG +G+I  H V  LLE G  ++
Sbjct: 18  VLVTGASGFIACHVVKQLLEEGKFIV 43


>SB_564| Best HMM Match : TrkA_N (HMM E-Value=0.05)
          Length = 226

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 141 KNILVTGGAGYIGSHCVVTLLEAGHEVIAI 230
           K ++V GG G  G H V   L+ GH V  I
Sbjct: 8   KKVVVFGGTGKTGLHVVQQALDRGHHVTVI 37


>SB_32568| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1918

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = +3

Query: 123 EIMPRFKNILVTGGAGYIGSHCVVTLL----EAGHEVIAIDNFTNSVEDED 263
           E++   K + VTG +G   S C+ TL     E GH+V      T +VE E+
Sbjct: 728 ELVSTHKVVCVTGPSGCGKSECIKTLAAAHREMGHQVKTDTVCTGAVESEE 778


>SB_17383| Best HMM Match : LytTR (HMM E-Value=2.4)
          Length = 536

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +3

Query: 246 SVEDEDGSPALQRAEKITGKKITFYKADLLDKPQINAIFDKHPVD 380
           S  DE+ +   QRAE IT  ++     +    P + A F   P D
Sbjct: 402 SARDEENNGIFQRAESITSPRLEVIDGNYKKGPVLTACFSLAPRD 446


>SB_2673| Best HMM Match : UPF0154 (HMM E-Value=1.9)
          Length = 322

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +2

Query: 416 GIDAATLIILPEQPAWDAQLIGDNAITQLLPNGVLVVMHSLR 541
           G+ A   I   E+P+W AQL G    T + P     V HS++
Sbjct: 245 GLGAQIHIDSVERPSWQAQLSGTKVWTLIPPPECEHVCHSMK 286


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,981,221
Number of Sequences: 59808
Number of extensions: 349022
Number of successful extensions: 941
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)