Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10n19f
         (608 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    23   1.8  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   5.4  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   5.4  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    21   7.1  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    21   9.4  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    21   9.4  

>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -1

Query: 251 YRVSEVVNCNDLMTGFQQC 195
           Y V E VN  DLM   QQC
Sbjct: 61  YFVMEYVNGGDLMYQIQQC 79


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 11/54 (20%), Positives = 22/54 (40%)
 Frame = +2

Query: 437 IILPEQPAWDAQLIGDNAITQLLPNGVLVVMHSLRRT*TLADHGDSSHWKYHKC 598
           ++  E P WD Q +   A  +    G L +  +L+    +    +  ++ Y  C
Sbjct: 168 VVRREHPFWDDQRVEQEAKRRFEKYGQLFMEETLKAAKRMRPAANWGYYAYPYC 221


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 242 SEVVNCNDLMTGFQ 201
           S++ NCN LMT F+
Sbjct: 179 SDLDNCNHLMTKFE 192


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 15/50 (30%), Positives = 19/50 (38%)
 Frame = +2

Query: 2   RSACEHELLARKIVISLIINRTIAVKLVYGRFKVNGSKKLRNNAAIQEHI 151
           R   E E      +IS + N+TI     Y     N  KKL  N    E +
Sbjct: 68  RDRTERERSREPKIISSLSNKTIHNNNNYNNNNYNNYKKLYYNINYIEQV 117


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +3

Query: 114 KN*EIMPRFKNILVTGGAGYIGSHCVVTLLEAGHEVIAID 233
           KN + +  F   L +GGA    S C V  L+     +A D
Sbjct: 107 KNTQFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAAD 146


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +3

Query: 114 KN*EIMPRFKNILVTGGAGYIGSHCVVTLLEAGHEVIAID 233
           KN + +  F   L +GGA    S C V  L+     +A D
Sbjct: 107 KNTQFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAAD 146


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,278
Number of Sequences: 438
Number of extensions: 2834
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)