Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10n18r
         (744 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0621 - 5426210-5427787                                           29   3.9  
05_03_0323 - 12424243-12424776                                         29   3.9  
03_06_0400 + 33673429-33673560,33674611-33674788,33674933-336751...    29   3.9  

>08_01_0621 - 5426210-5427787
          Length = 525

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -1

Query: 507 TDMIQQYMRRNEAGSSVEGCPLRTGGLLTCYRGASPAPPPVLALQVDVTD 358
           TD +   +RR  A S +    + T      +RGA P+PPP  A   D+ D
Sbjct: 324 TDDVLLLVRRRAADSDIR--EVFTHAYRARHRGARPSPPPAWAPVTDIGD 371


>05_03_0323 - 12424243-12424776
          Length = 177

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = +2

Query: 242 GRGGVAETRGSAGRPHASNICGMYERGGDGDFL 340
           G GG    RGSAGR HA    G +E   D DF+
Sbjct: 133 GNGGNGRGRGSAGRGHA---IGAHEDDVDADFV 162


>03_06_0400 +
           33673429-33673560,33674611-33674788,33674933-33675100,
           33675207-33675382,33675508-33675666,33676093-33676230,
           33676294-33676355,33676509-33676644,33677174-33677268,
           33677520-33677635,33677716-33677845,33677938-33677992,
           33678065-33678205
          Length = 561

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -1

Query: 414 RGASPAPPPVLALQVDVTDAPL 349
           RGASPAPPP  + Q D  + PL
Sbjct: 31  RGASPAPPPPASSQDDDINMPL 52


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,692,467
Number of Sequences: 37544
Number of extensions: 331095
Number of successful extensions: 1131
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)